RNA id: TU283776


Basic Information

Item Value
RNA id TU283776
length 2839
lncRNA type read_through
GC content 0.37
exon number 2
gene id CI01000058_04678629_04687645
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4678102 ~ 4689520 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTTTTGTAACTGTCGCATTTCTATTAGACCTTAGATGATTTGTATGTTTTAAACACAGAGTACTAGAAATTTGCACAAAATAAATCACAACTGATGACAAATTAGAACATTTAAATGGAATGTATAAAACTGTCAAAACAAAAGTCTGGACAAGGGAGATCTGATACTTTTACTGCTTCTCAGATATCTTTGAATGACAGCATTCATACTTGGGGTTTTCTCTGACCTACAGTGCCAAATTCAAAATCATTCCTCTACCCATGTCTTAGATGGTACATCCCTTTTTCACATAGTATATATGCATGACCATTACATGTGTAGGACTGTTCCTCACTCTTTCCCAACACTTCAGACCTATATGTAACCATGGGAAGTGAGTAAGTTTACAATCTAATGAAGCAGTTGTGCCTTCAAGAATGGGTTACACAGACCACAAAACATCCAGTAATGAACTCTGGGAACACTTGATTTTCAAAGGAAGACAGATTACCTTGATAATTGGAGGATTAACAGAACTCAGAATGTGGTTTCCTGATATTTTCTTGCTACTAACTTTTTCAACACCTGTCAATAGTGATAGATTTGACACAAGGCAAGTCATTTGAGCAGGAAACTTGACAGTGAGAACAGCAGTCACTTTAGTGTAGCATTTCCATCCACACACCATGTAGGTGTCAAATATTATAGTCAAGTGATTGTAGTCCATCTTTCTCACTTGTAAAGGGATGAGCAGCTCAGTCAGAATGCAATTGAGAATGTTACCTATTTTACATATTCATGTTTGCAAGGAGTATTCCACTTTTTAGGATGAAATGTCATCACCTGCTTGTTTTTAAAGATGATGATTAGCTGAACTGTCTTTGTTTAGCGCTCTTCCTCTTCTGCTGGTCAGATCCTGTTCTCCGCAGATGACGAAATGGAGGATTCAGATGGTGACGACGATATACGAAGAATCATAGGGCTCAAGCCTGTTAAGAAAAAGAAGCACCGTCTTGGTATTCCAGTTTGAATTCAAATCGATTTGGACTTGGGGTCATGGGAACGAGGGAGGCCTCAACTCATTTACCAGAGCACAGATCAGCAAGTGAGGGGCATAATGACTAAGTCTATGAATTGTGGGGTAACGGACCCAGGCTCCAGTAAACACACACGAGAGGACCCTCCTGACATTACCAGAAAGATTTTTGCTATTCTATGCCACAGATGATTGAGGGATCAATCATCTGACCAGCCTATTGGGAGATGATCGGACCATATTTTCACTGTTTTTTTTTTGCACATTCATAATTCTGCTTAAACATCATGTGGTTCTGCAGTGGATATACAACCCAGCTACTCCTATCTCCTTGCATCTGTCTAACATTTGAACTGATAAAAAAAAAAAAAAATCAGTCTAAACCTATACAAATAACATGCTGATGTTGTTCTGCTGAGATAAGTACCTTTAACTGTATGCATGTGATTGATCACACTTGGGCGAACTGTTCAAGGTCACTCATAGTCGGTTCCTAAACGTGTTTGTAAGCGTGGCTGCAGCAGAAAGTTTTGTGCACGTCAGCAGTGTTATGAGCTGGTATTATAATACAGTTGGTACGGTCTTGCAATGTGTGTTTTTAACCATTAGGCAGCAGCCAAATTGACAAGGTACAAAATTCCAGGGGTGGCTGTTTCATAACACTAATCTAATGGCTTGTCTTGCTGTTTGGTTTTTGAAAGAGTATCTGCCTCAATTCAGTGTGTTGCTGTGTTTTTTCTGCCATTAATGTTTTCCCTGTATTTGTTTTTTTTTTTCTCTTTTTTTTTTGTGGCCTATTAAAGGGACAGTTCACCCAGAAATTAAAGTCATTTAATGCAATGCAAATTATATTTTGAATAATGTTGCAGTCCAAAAATGTCATTGAGTTCCATTGTATAAACGCACACAAAAAAGGTTTTTTTTTTTTTTTTTTTTTTCAAAATGTCTTGTTTCACAGAAGAGTGAAAGTCATAGAGGTTTGGAAGTAAATGAGGGTGACTAATCTATTATGATTTTCATTTTTGGGTGAAGTGTCCTTTTAAATTTTCATTTTTGCTACTTATTGCAGGGAAGGTGCTATGTTACAGGACGTAACCTCTTACACAGTTTGGTGTTGCATTGTTGTCTCTTTGTGTGCGGTATTACCTTCGTTGTTTTTTTTTTTTTTTGTCTTTAAGCATTACCCCTGCACCTCTACTTAATATTTAGCAGTTAAACGCTAAACCAGTGGGTCTTTCTTCCAAATACTTTCTCATCCACTCTCACGCTTTTCTGCTCTATGGAGCATTTGATTTTATTCCAACACTAAAGCACAGATATTTGGAGAATAATGCATTGCAACCTGCATTCTCTGCAGAAATTTTAAACAGACTGTCATCTGTCAGATTATTTGTAATCTTTAATGTGAAGAGGAAGATGCCTGTAGGTTTAGAGTTGGAGTAAATGAAATTGGGAGTACAGGACCAATTGTCTTATTGTTTGTATTGTCTAACTGACATTTAATGGACCAAGTTTGTGGGAGTAATATGTTTGCACACAGTTTGTGTTTTACAGGGATGAATTGAAAGTGGGTTTCTGGTCAAGCCTGCTGGATGAACATGATTACTGATAAGGATTTTGTCTAGGTGGAAATGTAACTGCCTTTCCCTCTCCAGGTTTGAATCTGACTATTATTAGAGAGTGATCTTGGTTACGGTTGCAAGAGAATGAAATAAATTGGATGTGGAGAGGGGTTTTAAGTACTAAACAATATTAGATGATTTAGAGTTACTGACAAATCATGAACTTATGTATGCTTTTTCAATAAACAAGTGTAAAATCA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283786 lncRNA upstream 9484 4676913 ~ 4677151 (+) True G250049
TU283764 lncRNA upstream 144392 4541999 ~ 4542243 (+) True G250035
TU283723 lncRNA upstream 234064 4451527 ~ 4452571 (+) True G250013
TU283680 lncRNA upstream 265843 4420348 ~ 4420792 (+) True G249979
TU283681 lncRNA upstream 268371 4417925 ~ 4418264 (+) True G249980
TU283812 lncRNA downstream 38289 4727809 ~ 4738445 (+) True G250075
TU283841 lncRNA downstream 194485 4884005 ~ 4884279 (+) True G250098
TU283838 lncRNA downstream 194942 4884462 ~ 4885100 (+) True G250095
TU283863 lncRNA downstream 215420 4904940 ~ 4905140 (+) True G250120
TU283867 lncRNA downstream 228852 4918372 ~ 4918573 (+) True G250124
CI01000058_04656762_04675421.mRNA mRNA upstream 10538 4656316 ~ 4676097 (+) True CI01000058_04656762_04675421
CI01000058_04637318_04650366.mRNA mRNA upstream 36129 4637218 ~ 4650506 (+) True CI01000058_04637318_04650366
CI01000058_04584028_04613429.mRNA mRNA upstream 72888 4584028 ~ 4613747 (+) True CI01000058_04584028_04613429
CI01000058_04556260_04565696.mRNA mRNA upstream 120627 4556157 ~ 4566008 (+) True CI01000058_04556260_04565696
CI01000058_04466648_04523385.mRNA mRNA upstream 163152 4466196 ~ 4523483 (+) True CI01000058_04466648_04523385
CI01000058_04748480_04757498.mRNA mRNA downstream 58904 4748424 ~ 4757638 (+) True CI01000058_04748480_04757498
CI01000058_04769469_04774262.mRNA mRNA downstream 79949 4769469 ~ 4774485 (+) True CI01000058_04769469_04774262
CI01000058_04777182_04780095.mRNA mRNA downstream 87022 4776542 ~ 4780376 (+) True CI01000058_04777182_04780095
CI01000058_04782847_04791049.mRNA mRNA downstream 93327 4782847 ~ 4791555 (+) True CI01000058_04782847_04791049
CI01000058_04792565_04803181.mRNA mRNA downstream 103045 4792565 ~ 4803404 (+) True CI01000058_04792565_04803181
TU281441 other upstream 2888903 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 3230188 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 3398365 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 4089464 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 4230891 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 4888 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 4942 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 4942 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 4942 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 136856 4826376 ~ 4849531 (+) True G250094

Expression Profile