RNA id: CI01000058_05091135_05091372.mRNA


Basic Information

Item Value
RNA id CI01000058_05091135_05091372.mRNA
length 881
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000058_05091135_05091372
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 5091135 ~ 5092015 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTCTAAAAAGAGTGTCCCCAAGCAGACAACCACATCTACAACACATAGACTTCCACAACCAGCAGAGTTCATACCGAGAAGGAAATAGCAAACACATCACCGACTTAATGAAAAAGAACATACGGTTTAAACGAGACACTGACCCAGTATCTGTATGGCGTTGCGGCCCGGACGGGTCACATGATGCTGCTGGATGGTTTCGTACAAAGTGGCGTGGCACAGCAATAAGCAGCTAACACTTATCCACAGACACAGGAGCCAGGACATGGCAGGAGCACCGGCTGAAGAGAAAAGACATCAAAGAGAGAAGATAAAAGCAGAATGTTTATTCTATCTGACACACACACACACACACACCTACAATGCACGTACGATTTCAGCCCTCAGCTTTATTGAATACTGCGGCATTAACAAGCATTATTTCACATTGTAACTTTTATTTAAAGTCAAAATAGTTCAAAAATTGACAATTGCAGTTTTAAATCAACAGTTAAAGTACACTATGTCCTTGTTACAGTGTAATTACATATTAAGTACTGTATAATAACAAAATGGGTTAGTTTTTTTGGGTTTAGGGTTAGTTGCATGTGAATATGCAAAAATGTATAGTTATTACTATAGTAACTACATGTAACGTGTAACAAGGTGTTACCAACCACACTAATTAATCAAGGGAATAACCGTAAGTCTTTTTGCATTATGTTATGGTGAGTTTTCTCATATCTAGTTGATAACCTTGGATTGATCAGCACTGCGAGACAGGAACACAAACCAAATGAGTTTCCTCATGACTGCTTTTATATATAATAACACTGAATTAGGGTCAAAACAAAATGTCATTTAATAATCCACTAATAACAACCAAAACATTTAACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283867 lncRNA upstream 172562 4918372 ~ 4918573 (+) True G250124
TU283863 lncRNA upstream 185995 4904940 ~ 4905140 (+) True G250120
TU283838 lncRNA upstream 206035 4884462 ~ 4885100 (+) True G250095
TU283841 lncRNA upstream 206856 4884005 ~ 4884279 (+) True G250098
TU283812 lncRNA upstream 352690 4727809 ~ 4738445 (+) True G250075
TU283965 lncRNA downstream 88886 5180901 ~ 5181105 (+) True G250219
CI01000058_04923557_04926609.mRNA mRNA upstream 163481 4923290 ~ 4927654 (+) True CI01000058_04923557_04926609
CI01000058_04864571_04888198.mRNA mRNA upstream 202919 4864571 ~ 4888216 (+) False CI01000058_04864571_04888198
CI01000058_04806751_04821030.mRNA mRNA upstream 269440 4806751 ~ 4821695 (+) True CI01000058_04806751_04821030
CI01000058_04792565_04803181.mRNA mRNA upstream 287731 4792565 ~ 4803404 (+) True CI01000058_04792565_04803181
CI01000058_04782847_04791049.mRNA mRNA upstream 299580 4782847 ~ 4791555 (+) True CI01000058_04782847_04791049
TU283837 other upstream 207298 4826376 ~ 4849531 (+) True G250094
TU283770 other upstream 393974 4694462 ~ 4697161 (+) False G250039
TU283771 other upstream 394103 4694462 ~ 4697032 (+) True G250039
TU283772 other upstream 394225 4694408 ~ 4696910 (+) False G250039

Expression Profile