RNA id: TU280487


Basic Information

Item Value
RNA id TU280487
length 357
lncRNA type intronic
GC content 0.47
exon number 1
gene id G247133
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 37230 ~ 37586 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGAGGGAAAACAAGCTGACTTGTGTGGGGAAAAATATGTTGTTGTCAATGATATATTGTACATGCAAACACCTGATTCTACCTGTTTGGTTGTCCCTACATGTTGTCGTACCCTTGTGTTACACCTAGCACACAGTGTTCCATGGGCAGGGCACATGGCACTCCAAAAGACCTATGCACGTATTAGCTCACGATTCGTTTGGCCCTCCATGTACACTAATGTACAAACATACTGCACCACATGCCATACATGTCAAAAGACCAGTGCTGTGCGCCAACGAGATAGGGCACCGTTACATCCTCTGCCTGTGATATCTGTCCCCTTTCAGTGCATCGCCATGGACATTGTTGGGCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280484 lncRNA upstream 1072 35958 ~ 36158 (+) True G247130
TU280483 lncRNA upstream 1470 35532 ~ 35760 (+) True G247129
TU280481 lncRNA upstream 2636 34378 ~ 34594 (+) True G247127
TU280478 lncRNA upstream 5861 31022 ~ 31369 (+) False CI01000058_00021632_00039608
TU280488 lncRNA downstream 54 37640 ~ 37939 (+) True G247134
TU280489 lncRNA downstream 532 38118 ~ 38355 (+) True CI01000058_00021632_00039608
TU280505 lncRNA downstream 8062 45648 ~ 45947 (+) True G247150
TU280510 lncRNA downstream 12432 50018 ~ 50321 (+) True G247155
TU280515 lncRNA downstream 13961 51547 ~ 51928 (+) True G247160
CI01000058_00043409_00059894.mRNA mRNA downstream 5823 43409 ~ 60422 (+) True CI01000058_00043409_00059894
CI01000058_00104333_00105839.mRNA mRNA downstream 66747 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00241253_00245763.mRNA mRNA downstream 203667 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00313907_00314170.mRNA mRNA downstream 276171 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00333202_00355871.mRNA mRNA downstream 295454 333040 ~ 355875 (+) True CI01000058_00333202_00355871
TU280659 other downstream 397456 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 554745 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 1191023 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1415411 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1758127 1795713 ~ 1795757 (+) True G247958

Expression Profile