RNA id: TU280505


Basic Information

Item Value
RNA id TU280505
length 300
lncRNA type intronic
GC content 0.45
exon number 1
gene id G247150
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 45648 ~ 45947 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGCATCCGCCCTCATTGACAGTCCAGATTGTTCCAAATGCGAGCTGCTATCTTTGCTCAGCCATTTAAACTTTGCAATGCGCATAATCCTGCAAGGACACCCTTACATCTCGCATCTCCTCTCCCTCGCGTCATCAGTTCATGCACTAGAGGACCAAATCTCACTAACTAGTTCATGCTGCAACGAGCTCAGCCTGTGGATAACTTTCCTTAAACAATGGAACGGTATGTCTTTCTTTTATAATAATTTGGTTTCTCTCCCCAAGGATATTCAACTGTTTACTGACGCAGCTCCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280489 lncRNA upstream 7293 38118 ~ 38355 (+) True CI01000058_00021632_00039608
TU280488 lncRNA upstream 7709 37640 ~ 37939 (+) True G247134
TU280487 lncRNA upstream 8062 37230 ~ 37586 (+) True G247133
TU280484 lncRNA upstream 9490 35958 ~ 36158 (+) True G247130
TU280483 lncRNA upstream 9888 35532 ~ 35760 (+) True G247129
TU280510 lncRNA downstream 4071 50018 ~ 50321 (+) True G247155
TU280515 lncRNA downstream 5600 51547 ~ 51928 (+) True G247160
TU280517 lncRNA downstream 6436 52383 ~ 52678 (+) True G247162
TU280518 lncRNA downstream 6937 52884 ~ 53102 (+) True G247163
TU280520 lncRNA downstream 8249 54196 ~ 54638 (+) True G247165
CI01000058_00021632_00039608.mRNA mRNA upstream 5678 21480 ~ 39970 (+) False CI01000058_00021632_00039608
CI01000058_00104333_00105839.mRNA mRNA downstream 58386 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00241253_00245763.mRNA mRNA downstream 195306 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00313907_00314170.mRNA mRNA downstream 267810 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00333202_00355871.mRNA mRNA downstream 287093 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00382692_00395743.mRNA mRNA downstream 336745 382692 ~ 395774 (+) True CI01000058_00382692_00395743
TU280659 other downstream 389095 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 546384 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 1182662 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1407050 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1749766 1795713 ~ 1795757 (+) True G247958

Expression Profile