RNA id: TU280517


Basic Information

Item Value
RNA id TU280517
length 296
lncRNA type intronic
GC content 0.28
exon number 1
gene id G247162
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 52383 ~ 52678 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATAGGCTATTAACAAATTATGGTCACTATAAGAGTAAAACAGAGGTCAAAATGTGAAGCTTGAGTCTTAGATCTTTTTAATGATGTATAGTTTGTCAACTGCACATTAACATTTAGGCTAGATAATATAACAAATATAATAGCCTATATGAAATGCCATAGAGGTAACATGAATGTTCAGATGCTTTGCATCACAGAAATACATTATATTTTAAAGTATATTAAAATAGAAAACCATTATTTGGTTTGAGACTTATTTTAAAAACATTATAATAGTAATGCGTCCAATCTTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280515 lncRNA upstream 455 51547 ~ 51928 (+) True G247160
TU280510 lncRNA upstream 2062 50018 ~ 50321 (+) True G247155
TU280505 lncRNA upstream 6436 45648 ~ 45947 (+) True G247150
TU280489 lncRNA upstream 14028 38118 ~ 38355 (+) True CI01000058_00021632_00039608
TU280488 lncRNA upstream 14444 37640 ~ 37939 (+) True G247134
TU280518 lncRNA downstream 206 52884 ~ 53102 (+) True G247163
TU280520 lncRNA downstream 1518 54196 ~ 54638 (+) True G247165
TU280532 lncRNA downstream 9192 61870 ~ 62126 (+) True G247176
TU280553 lncRNA downstream 90077 142755 ~ 143591 (+) True G247192
TU280618 lncRNA downstream 175219 227897 ~ 228534 (+) True G247257
CI01000058_00021632_00039608.mRNA mRNA upstream 12413 21480 ~ 39970 (+) False CI01000058_00021632_00039608
CI01000058_00104333_00105839.mRNA mRNA downstream 51655 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00241253_00245763.mRNA mRNA downstream 188575 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00313907_00314170.mRNA mRNA downstream 261079 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00333202_00355871.mRNA mRNA downstream 280362 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00382692_00395743.mRNA mRNA downstream 330014 382692 ~ 395774 (+) True CI01000058_00382692_00395743
TU280659 other downstream 382364 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 539653 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 1175931 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1400319 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1743035 1795713 ~ 1795757 (+) True G247958

Expression Profile