RNA id: TU280518


Basic Information

Item Value
RNA id TU280518
length 219
lncRNA type intronic
GC content 0.36
exon number 1
gene id G247163
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 52884 ~ 53102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTCATTATGCGGGTCTTTGTCTTCTCAGGTGTGAATCATAGCATTATTCATGAAGATTCGCGCCTCCATGCATACTGTGTTTCTTGACAAAAAGTGTCTTACAAAATTTAAATCAATATATTGTTTTATATGAACGAGTAGGCAGGATAATTTTTACATCATTTTGAAGCAAAAACTCTAGACTACAACCTCCAATACCCAGAAGTCTTGTGAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280517 lncRNA upstream 206 52383 ~ 52678 (+) True G247162
TU280515 lncRNA upstream 956 51547 ~ 51928 (+) True G247160
TU280510 lncRNA upstream 2563 50018 ~ 50321 (+) True G247155
TU280505 lncRNA upstream 6937 45648 ~ 45947 (+) True G247150
TU280489 lncRNA upstream 14529 38118 ~ 38355 (+) True CI01000058_00021632_00039608
TU280520 lncRNA downstream 1094 54196 ~ 54638 (+) True G247165
TU280532 lncRNA downstream 8768 61870 ~ 62126 (+) True G247176
TU280553 lncRNA downstream 89653 142755 ~ 143591 (+) True G247192
TU280618 lncRNA downstream 174795 227897 ~ 228534 (+) True G247257
TU280679 lncRNA downstream 262877 315979 ~ 316343 (+) True G247300
CI01000058_00021632_00039608.mRNA mRNA upstream 12914 21480 ~ 39970 (+) False CI01000058_00021632_00039608
CI01000058_00104333_00105839.mRNA mRNA downstream 51231 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00241253_00245763.mRNA mRNA downstream 188151 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00313907_00314170.mRNA mRNA downstream 260655 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00333202_00355871.mRNA mRNA downstream 279938 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00382692_00395743.mRNA mRNA downstream 329590 382692 ~ 395774 (+) True CI01000058_00382692_00395743
TU280659 other downstream 381940 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 539229 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 1175507 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1399895 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1742611 1795713 ~ 1795757 (+) True G247958

Expression Profile