RNA id: TU280618


Basic Information

Item Value
RNA id TU280618
length 399
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G247257
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 227897 ~ 228534 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAACACTGCACTTGCAAAATCTCACTTCACTTAATAAATACAGTTGGGTCATAATATTTTGTCTCTTTTCAGACCCCAGCCTGGGTTCAGTGATGGACATGACAGCCCTACGAAATGTGCAGCCAAACAGGGCATGCTGGATGCATCCACAAAGCAGTGACCAAATGAAGATGATAAAAAATGCTTTAAATGAAAAGGAATCACGACAACAATTTTGGGCTCAAGTAGGAGAAACAATTCTGGACAGATTTTATTACCTTGGGACATCCAAATGATGTTGAAGGGACTATTTTGAATGCTTGCCTTTCAGTTATCAGAGATATTGCTGACTTAAAGAACATAAAGGTCCATTGTTTTAGCTCATATGTGACAGTGACATGGTTGCCACCATTGTGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280553 lncRNA upstream 84306 142755 ~ 143591 (+) True G247192
TU280532 lncRNA upstream 165771 61870 ~ 62126 (+) True G247176
TU280520 lncRNA upstream 173259 54196 ~ 54638 (+) True G247165
TU280518 lncRNA upstream 174795 52884 ~ 53102 (+) True G247163
TU280517 lncRNA upstream 175219 52383 ~ 52678 (+) True G247162
TU280679 lncRNA downstream 87445 315979 ~ 316343 (+) True G247300
TU280688 lncRNA downstream 103728 332262 ~ 332527 (+) True G247309
TU280693 lncRNA downstream 192596 421130 ~ 421530 (+) True G247314
TU280672 lncRNA downstream 197224 425758 ~ 426095 (+) True G247293
TU280695 lncRNA downstream 198713 427247 ~ 427462 (+) True G247316
CI01000058_00104333_00105839.mRNA mRNA upstream 121173 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00043409_00059894.mRNA mRNA upstream 167475 43409 ~ 60422 (+) True CI01000058_00043409_00059894
CI01000058_00021632_00039608.mRNA mRNA upstream 187927 21480 ~ 39970 (+) False CI01000058_00021632_00039608
CI01000058_00241253_00245763.mRNA mRNA downstream 12719 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00313907_00314170.mRNA mRNA downstream 85223 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00333202_00355871.mRNA mRNA downstream 104506 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00382692_00395743.mRNA mRNA downstream 154158 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00435196_00437830.mRNA mRNA downstream 206379 434913 ~ 438410 (+) False CI01000058_00435196_00437830
TU280659 other downstream 206508 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 363797 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 1000075 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1224463 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1567179 1795713 ~ 1795757 (+) True G247958

Expression Profile