RNA id: TU280672


Basic Information

Item Value
RNA id TU280672
length 338
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G247293
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 425758 ~ 426095 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCAGCCTCCTCTACTGAGCAGTTTATAAGACATAAATAAACATGCAGGTTCATAAGAAGTCAAACATATGTAAGTAGAGATCTTTCTTTTCCTTAGGAGGACACATTTCAAGGTAGGAAGGCATCAAGGCACGTCCGAATCCAATGTTAGTTCACTTCCTGTCTCCTGAGATACCTTCATCTGATTGATTTTTGAAGGCAGCACAGATGTATCCTTCGCTGCCTTTGATATCCCACAATCCTATGCTTTCCATTCGTTGACAGTTGAGCTAGAAAAAGCGTTTGCTGGTCAGTTTGTGTGTAAATGCACGTTTTTGACCAGCATTTTCCTCTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280693 lncRNA upstream 4228 421130 ~ 421530 (+) True G247314
TU280688 lncRNA upstream 93231 332262 ~ 332527 (+) True G247309
TU280679 lncRNA upstream 109415 315979 ~ 316343 (+) True G247300
TU280618 lncRNA upstream 197224 227897 ~ 228534 (+) True G247257
TU280553 lncRNA upstream 282167 142755 ~ 143591 (+) True G247192
TU280695 lncRNA downstream 1152 427247 ~ 427462 (+) True G247316
TU280700 lncRNA downstream 2349 428444 ~ 433463 (+) True G247317
TU280658 lncRNA downstream 8947 458090 ~ 460789 (+) True G247284
TU280706 lncRNA downstream 37644 463739 ~ 463981 (+) True G247323
TU280726 lncRNA downstream 63071 489166 ~ 489403 (+) True G247342
CI01000058_00382692_00395743.mRNA mRNA upstream 29984 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 69883 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 111088 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00241253_00245763.mRNA mRNA upstream 179651 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00104333_00105839.mRNA mRNA upstream 319034 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00435196_00437830.mRNA mRNA downstream 8818 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00466891_00481927.mRNA mRNA downstream 40538 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 91055 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 103090 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 121732 547827 ~ 567172 (+) True CI01000058_00548398_00567030
TU280659 other downstream 8947 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 166236 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 802514 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1026902 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1369618 1795713 ~ 1795757 (+) True G247958

Expression Profile