RNA id: TU280695


Basic Information

Item Value
RNA id TU280695
length 216
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G247316
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 427247 ~ 427462 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTTGCCAGAGCATTGTTAAGTGAATGAAAAGTAATAGCACATTTCTCCTCAACAAGCCACATGGTTTGAGTTATCCTTCATGTTCATTAAAATTAATTGAAAAGTGGAGTAGATTGCATATTTTTACATTTTGGATCTATTATATGTTGACATATGTTTTTGAAAAAAACACCACAGAGTGTGACTGTCACATGTATGCTCTGTTTTGGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280672 lncRNA upstream 1152 425758 ~ 426095 (+) True G247293
TU280693 lncRNA upstream 5717 421130 ~ 421530 (+) True G247314
TU280688 lncRNA upstream 94720 332262 ~ 332527 (+) True G247309
TU280679 lncRNA upstream 110904 315979 ~ 316343 (+) True G247300
TU280618 lncRNA upstream 198713 227897 ~ 228534 (+) True G247257
TU280700 lncRNA downstream 982 428444 ~ 433463 (+) True G247317
TU280658 lncRNA downstream 7580 458090 ~ 460789 (+) True G247284
TU280706 lncRNA downstream 36277 463739 ~ 463981 (+) True G247323
TU280726 lncRNA downstream 61704 489166 ~ 489403 (+) True G247342
TU280721 lncRNA downstream 78846 506308 ~ 507353 (+) True G247337
CI01000058_00382692_00395743.mRNA mRNA upstream 31473 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 71372 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 112577 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00241253_00245763.mRNA mRNA upstream 181140 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00104333_00105839.mRNA mRNA upstream 320523 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00435196_00437830.mRNA mRNA downstream 7451 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00466891_00481927.mRNA mRNA downstream 39171 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 89688 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 101723 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 120365 547827 ~ 567172 (+) True CI01000058_00548398_00567030
TU280659 other downstream 7580 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 164869 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 801147 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1025535 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1368251 1795713 ~ 1795757 (+) True G247958

Expression Profile