RNA id: TU280700



Basic Information


Item Value
RNA id TU280700
length 429
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G247317
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 428444 ~ 433463 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTAATGATGGGTCGACAGAATGTGGATCCATTTGCAGCTAGTTTATTAAAAGTACCTACAGAGTAGACAGGGCAAAGGCAGAGGCATAAACAGTAACAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGAATCAGGGTACAGGCAAGGATCAGGGCAGGCAGCAAAACAATCACAGTCCAGGAAACAGGCAAAGATCAGGGTCGGCAGCAAAGGGTCGCAGGGAATAAACAGTCCAATCGATAACAGGTAAACAGTCCACAGAAAAACGCTCAGAAATGATCACCAAGGCAAATCAAGACTTCGCGATGTGTGAGTGTGTGTGTGTGTGTCTTAAATAGTGTGAGTGTGATGCGGTGCAGGTGTGTGTGCAATCAGTCCCAGGAATGAGGGCCCATGGGAAACGTAGTCCGAATGAGAACTGATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280695 lncRNA upstream 982 427247 ~ 427462 (+) True G247316
TU280672 lncRNA upstream 2349 425758 ~ 426095 (+) True G247293
TU280693 lncRNA upstream 6914 421130 ~ 421530 (+) True G247314
TU280688 lncRNA upstream 95917 332262 ~ 332527 (+) True G247309
TU280679 lncRNA upstream 112101 315979 ~ 316343 (+) True G247300
TU280658 lncRNA downstream 1579 458090 ~ 460789 (+) True G247284
TU280706 lncRNA downstream 30276 463739 ~ 463981 (+) True G247323
TU280726 lncRNA downstream 55703 489166 ~ 489403 (+) True G247342
TU280721 lncRNA downstream 72845 506308 ~ 507353 (+) True G247337
TU280996 lncRNA downstream 249763 683226 ~ 683442 (+) True G247563
CI01000058_00382692_00395743.mRNA mRNA upstream 32670 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 72569 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 113774 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00241253_00245763.mRNA mRNA upstream 182337 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00104333_00105839.mRNA mRNA upstream 321720 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00435196_00437830.mRNA mRNA downstream 1450 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00466891_00481927.mRNA mRNA downstream 33170 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 83687 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 95722 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 114364 547827 ~ 567172 (+) True CI01000058_00548398_00567030
TU280659 other downstream 1579 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 158868 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 795146 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1019534 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1362250 1795713 ~ 1795757 (+) True G247958

Expression Profile