RNA id: TU280706


Basic Information

Item Value
RNA id TU280706
length 243
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G247323
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 463739 ~ 463981 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCACTTTTGCGGGTGCGCAGTAAGTGAGAGATAATGTAATAGTCCAATGTAGTGGGGTGGGGGCCCCCTTCTGTTTGCGCCTGTGCGCAACTAATGATTTAAGCATTCGGATGCAATTTTAGTGAATGGAGTTTTAGAATTATATAATTTTGCGGAAAGTAAAAAAAAAAAAAAAAAAACTTTAACCATAAGTTAAAGAGGCATTTTGGGGGTCCCTAGGTAGCTCGGGGCCCAAGGCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280658 lncRNA upstream 2950 458090 ~ 460789 (+) True G247284
TU280700 lncRNA upstream 30276 428444 ~ 433463 (+) True G247317
TU280695 lncRNA upstream 36277 427247 ~ 427462 (+) True G247316
TU280672 lncRNA upstream 37644 425758 ~ 426095 (+) True G247293
TU280693 lncRNA upstream 42209 421130 ~ 421530 (+) True G247314
TU280726 lncRNA downstream 25185 489166 ~ 489403 (+) True G247342
TU280721 lncRNA downstream 42327 506308 ~ 507353 (+) True G247337
TU280996 lncRNA downstream 219245 683226 ~ 683442 (+) True G247563
TU281012 lncRNA downstream 252529 716510 ~ 716777 (+) True G247578
TU281055 lncRNA downstream 263458 727439 ~ 727828 (+) True G247617
CI01000058_00435196_00437830.mRNA mRNA upstream 25329 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00382692_00395743.mRNA mRNA upstream 67965 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 107864 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 149069 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00241253_00245763.mRNA mRNA upstream 217632 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00466891_00481927.mRNA mRNA downstream 2652 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 53169 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 65204 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 83846 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00592498_00596709.mRNA mRNA downstream 128483 592464 ~ 596813 (+) False CI01000058_00592498_00596709
TU280659 other upstream 7995 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 128350 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 764628 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 989016 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1331732 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 4230427 4694408 ~ 4696910 (+) False G250039

Expression Profile