RNA id: TU280721


Basic Information

Item Value
RNA id TU280721
length 1046
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G247337
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 506308 ~ 507353 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTCTCGTGTGTAATTGTCATGACCCCTGTTCTGTGTCTTTTGTTTTGTATGGACTTTTATGTTGAAATGTATTCTCTGTTCTCATTGTATCTGTGCACACTTCCTGTGTTTGGTATGTGTTTCTCCTTGGGTGCTTCTCAATTCTTATTTGTGCATCCTTGTTTCCTTTCCTCGCATCTTAGCTCCACCCCTTTAGGATGCAACGGAAGGACACAAGGAAAAGATGGGAGGACAGAGGAATTTAATCAAGTGAAATGATATCCTCGCTCCCTTTATCGTCACTTCAAAGCATCATCAGCTGCACTCGAGGGATCTACCCATATGTTGTTAAAGTTTGGTTATTTAAAAAATTATAATAAATATTAATAAGGAAAGATGCCCCATTAAAATATGTGAGATGTAAAGTTTATTTAAACTGCAAAAGTAAACCATACATTTAAATGATTGTGACAGATATGAAGGGGGAGGAGAATTTATACGTGCCTCACGTTTCTCGACGAGAAAGACTTCCGCAAAGGATACACCTGTGTGTCCTCGCTCATGACTCCTCAGGAAGCTTCCTCACTCCTCGTTCCTCGCCTCCTCGCGGTGCAATTAGAGAATTGAGATGTCCTACAAGATGGCTGAGCTTGATCGGTTTCCGGGTCATAGGATGGAGGACGGAGGAGCGAGGAAACAAGGAGGGATATTGAGAAGCACCCCTTGTCATATTAGTTACTATAGTTACCATTAGTGTTGTAGTACTCAAGACCGGTCTTTGTCTTGAGACCAGTCTTAAGACCATTTTTTGAAGGTCTTGGTCTCAGACTAAAAGGACTCTGGGTTTTATTTCAAGACCACTCAAGACCACAACTGCGGGGATATCGCTAACTTGCTGTTGCATTGTCTGATTTCTTTGTTAACATCATTAATTTGATTGGATATAAAACTTCCTGCTTCAAATGCAATCAATAACTTATTTCATTTATTTTGTTACTGTTGTGCTGGGTCAGAAATCAACAAGGGATTGTGTCAAAAATGTCACCAAAATTAATACAAATGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280726 lncRNA upstream 16905 489166 ~ 489403 (+) True G247342
TU280706 lncRNA upstream 42327 463739 ~ 463981 (+) True G247323
TU280658 lncRNA upstream 45519 458090 ~ 460789 (+) True G247284
TU280700 lncRNA upstream 72845 428444 ~ 433463 (+) True G247317
TU280695 lncRNA upstream 78846 427247 ~ 427462 (+) True G247316
TU280996 lncRNA downstream 175873 683226 ~ 683442 (+) True G247563
TU281012 lncRNA downstream 209157 716510 ~ 716777 (+) True G247578
TU281055 lncRNA downstream 220086 727439 ~ 727828 (+) True G247617
TU281094 lncRNA downstream 233495 740848 ~ 754686 (+) False G247641
TU281096 lncRNA downstream 233495 740848 ~ 754686 (+) False G247641
CI01000058_00466891_00481927.mRNA mRNA upstream 24291 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00435196_00437830.mRNA mRNA upstream 67898 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00382692_00395743.mRNA mRNA upstream 110534 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 150433 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 191638 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00517452_00527181.mRNA mRNA downstream 9797 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 21832 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 40474 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00592498_00596709.mRNA mRNA downstream 85111 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_00652594_00653181.mRNA mRNA downstream 144982 652335 ~ 654903 (+) True CI01000058_00652594_00653181
TU280659 other upstream 50564 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 84978 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 721256 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 945644 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1288360 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 4187055 4694408 ~ 4696910 (+) False G250039

Expression Profile