RNA id: TU281012


Basic Information

Item Value
RNA id TU281012
length 268
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G247578
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 716510 ~ 716777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATGTGTTTATTTTAACCGTGCGGTGGCGCCAGATACTCTTTAATCGGTAATGACAAAAGGAGACATAATTAATTTATAACATTAACAAGATGACTCGTTGAATTCATTTTGGGAGCGACGACTGAATGTATTTTTAGTCAAATGCCTGTATATAAGATTAGTATTGACAAAGTTCAGAGGCTGTCATATATGTGAATCAACTTACTTTGTTGTGTATTTTCAATATGAAAAATAACTTTTATATTGATGGATTAATTGCATTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280996 lncRNA upstream 33068 683226 ~ 683442 (+) True G247563
TU280721 lncRNA upstream 209157 506308 ~ 507353 (+) True G247337
TU280726 lncRNA upstream 227107 489166 ~ 489403 (+) True G247342
TU280706 lncRNA upstream 252529 463739 ~ 463981 (+) True G247323
TU280658 lncRNA upstream 255721 458090 ~ 460789 (+) True G247284
TU281055 lncRNA downstream 10662 727439 ~ 727828 (+) True G247617
TU281094 lncRNA downstream 24071 740848 ~ 754686 (+) False G247641
TU281096 lncRNA downstream 24071 740848 ~ 754686 (+) False G247641
TU281097 lncRNA downstream 24071 740848 ~ 754686 (+) True G247641
TU281109 lncRNA downstream 46818 763595 ~ 763815 (+) True G247653
CI01000058_00652594_00653181.mRNA mRNA upstream 61607 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00592498_00596709.mRNA mRNA upstream 119697 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_00548398_00567030.mRNA mRNA upstream 149338 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00529237_00544012.mRNA mRNA upstream 172483 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00517452_00527181.mRNA mRNA upstream 187703 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00728698_00738214.mRNA mRNA downstream 11743 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00847992_00862210.mRNA mRNA downstream 130520 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00870909_00930600.mRNA mRNA downstream 154132 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_01239590_01240099.mRNA mRNA downstream 522725 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_01248234_01262911.mRNA mRNA downstream 531457 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
TU280966 other upstream 119339 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 260766 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281473 other downstream 511832 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 736220 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1078936 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3977631 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3977685 4694462 ~ 4696910 (+) False G250039

Expression Profile