RNA id: TU281109


Basic Information

Item Value
RNA id TU281109
length 221
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G247653
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 763595 ~ 763815 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCAGATGAAACCTGGGGGTCGACTAGGGTTGGAAATCATAAGAAATTTTCCGGTTCCAATTCCGGTTCCATTAAAATTATTAAACAACCAATAAAAAAATAGTAGCAAGGGGAAAATGCACAATACTGTCAAGGACTCAAAGAGTCCTTTTTGTGTTTATTATACTTGTAAAATGAGTTTAACAGACTGCTAATATCAACAAATTCACTAACACTTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281094 lncRNA upstream 8909 740848 ~ 754686 (+) False G247641
TU281096 lncRNA upstream 8909 740848 ~ 754686 (+) False G247641
TU281097 lncRNA upstream 8909 740848 ~ 754686 (+) True G247641
TU281055 lncRNA upstream 35767 727439 ~ 727828 (+) True G247617
TU281012 lncRNA upstream 46818 716510 ~ 716777 (+) True G247578
TU281119 lncRNA downstream 21210 785025 ~ 785240 (+) True G247663
TU281123 lncRNA downstream 26464 790279 ~ 790496 (+) True G247667
TU281128 lncRNA downstream 30273 794088 ~ 794313 (+) True G247672
TU281140 lncRNA downstream 43070 806885 ~ 807312 (+) True G247683
TU281080 lncRNA downstream 167189 931004 ~ 932179 (+) True G247639
CI01000058_00728698_00738214.mRNA mRNA upstream 24657 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00652594_00653181.mRNA mRNA upstream 108692 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00592498_00596709.mRNA mRNA upstream 166782 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_00548398_00567030.mRNA mRNA upstream 196423 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00529237_00544012.mRNA mRNA upstream 219568 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00847992_00862210.mRNA mRNA downstream 83482 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00870909_00930600.mRNA mRNA downstream 107094 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_01239590_01240099.mRNA mRNA downstream 475687 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_01248234_01262911.mRNA mRNA downstream 484419 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01266712_01271962.mRNA mRNA downstream 501938 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
TU280966 other upstream 166424 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 307851 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281473 other downstream 464794 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 689182 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1031898 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3930593 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3930647 4694462 ~ 4696910 (+) False G250039

Expression Profile