RNA id: TU281123


Basic Information

Item Value
RNA id TU281123
length 218
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G247667
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 790279 ~ 790496 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCTGCCACCCTGATTCCCAGGCTCACAACAGAGATGTAAGCATGGAGAATTTCCACTCTGCACTTTTTCAATGGAGAAAATCAGAAATGTATGTTAATGTATGATAATCTGTGAAAATGACATGCAGATGAGCATTTGAATCTACAATACAGCATAAGACTGATGCTACATATGCATATGGAGACAGATGCCATGGTAGAATGCACACATACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281119 lncRNA upstream 5039 785025 ~ 785240 (+) True G247663
TU281109 lncRNA upstream 26464 763595 ~ 763815 (+) True G247653
TU281094 lncRNA upstream 35593 740848 ~ 754686 (+) False G247641
TU281096 lncRNA upstream 35593 740848 ~ 754686 (+) False G247641
TU281097 lncRNA upstream 35593 740848 ~ 754686 (+) True G247641
TU281128 lncRNA downstream 3592 794088 ~ 794313 (+) True G247672
TU281140 lncRNA downstream 16389 806885 ~ 807312 (+) True G247683
TU281080 lncRNA downstream 140508 931004 ~ 932179 (+) True G247639
TU281153 lncRNA downstream 145719 936215 ~ 936445 (+) True G247696
TU281162 lncRNA downstream 176652 967148 ~ 967373 (+) True G247705
CI01000058_00728698_00738214.mRNA mRNA upstream 51341 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00652594_00653181.mRNA mRNA upstream 135376 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00592498_00596709.mRNA mRNA upstream 193466 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_00548398_00567030.mRNA mRNA upstream 223107 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00529237_00544012.mRNA mRNA upstream 246252 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00847992_00862210.mRNA mRNA downstream 56801 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00870909_00930600.mRNA mRNA downstream 80413 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_01239590_01240099.mRNA mRNA downstream 449006 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_01248234_01262911.mRNA mRNA downstream 457738 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01266712_01271962.mRNA mRNA downstream 475257 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
TU280966 other upstream 193108 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 334535 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281473 other downstream 438113 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 662501 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1005217 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3903912 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3903966 4694462 ~ 4696910 (+) False G250039

Expression Profile