RNA id: TU281153


Basic Information

Item Value
RNA id TU281153
length 231
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G247696
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 936215 ~ 936445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGCTTTCATTCTAGTTGTACATATTTTCATTCTACATAATCACTGTTTCAAACACAATATTATTGTAATATGTAATGAGAACATTTGGTTTAATTACCGAAACACAACAGTATGATCTTCTTTCAGTTTAGTACTTTTAACAATCAGTTCATTCAATAGCAAACAATGCAATATACTGTACGTTTCAAATCACCCTTGTTGCTGAAATAATTACAGTTACAGGTGCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281080 lncRNA upstream 4036 931004 ~ 932179 (+) True G247639
TU281140 lncRNA upstream 128903 806885 ~ 807312 (+) True G247683
TU281128 lncRNA upstream 141902 794088 ~ 794313 (+) True G247672
TU281123 lncRNA upstream 145719 790279 ~ 790496 (+) True G247667
TU281119 lncRNA upstream 150975 785025 ~ 785240 (+) True G247663
TU281162 lncRNA downstream 30703 967148 ~ 967373 (+) True G247705
TU281168 lncRNA downstream 34194 970639 ~ 970871 (+) True G247711
TU281180 lncRNA downstream 70280 1006725 ~ 1007170 (+) True G247723
TU281278 lncRNA downstream 97670 1034115 ~ 1034346 (+) True G247820
TU281279 lncRNA downstream 103666 1040111 ~ 1040344 (+) True G247821
CI01000058_00870909_00930600.mRNA mRNA upstream 5615 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_00847992_00862210.mRNA mRNA upstream 73785 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00728698_00738214.mRNA mRNA upstream 197277 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00652594_00653181.mRNA mRNA upstream 281312 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00592498_00596709.mRNA mRNA upstream 339402 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_01239590_01240099.mRNA mRNA downstream 303057 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_01248234_01262911.mRNA mRNA downstream 311789 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01266712_01271962.mRNA mRNA downstream 329308 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
CI01000058_01280337_01289153.mRNA mRNA downstream 342147 1278592 ~ 1289874 (+) False CI01000058_01280337_01289153
CI01000058_01298298_01311989.mRNA mRNA downstream 361631 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
TU280966 other upstream 339044 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 480471 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281473 other downstream 292164 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 516552 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 859268 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3757963 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3758017 4694462 ~ 4696910 (+) False G250039

Expression Profile