RNA id: TU281162


Basic Information

Item Value
RNA id TU281162
length 226
lncRNA type intronic
GC content 0.29
exon number 1
gene id G247705
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 967148 ~ 967373 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGGGTTTGATTTTTTCAGAGATATTGTTAGAGTAAAGTACATGAATATATAGACAAAAAACAAAACAAAAAAAAAAAACCACACAAGATCAATACTGCACATTGATGAAAATATTTATTTCTCACCACATTGTAAAACCATTCAATACATCCATGCCTTTCCAAAGGTTGCATTTTGCACTGGAAATCAGAACATATTCTAAATACAATATATTACATGAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281153 lncRNA upstream 30703 936215 ~ 936445 (+) True G247696
TU281080 lncRNA upstream 34969 931004 ~ 932179 (+) True G247639
TU281140 lncRNA upstream 159836 806885 ~ 807312 (+) True G247683
TU281128 lncRNA upstream 172835 794088 ~ 794313 (+) True G247672
TU281123 lncRNA upstream 176652 790279 ~ 790496 (+) True G247667
TU281168 lncRNA downstream 3266 970639 ~ 970871 (+) True G247711
TU281180 lncRNA downstream 39352 1006725 ~ 1007170 (+) True G247723
TU281278 lncRNA downstream 66742 1034115 ~ 1034346 (+) True G247820
TU281279 lncRNA downstream 72738 1040111 ~ 1040344 (+) True G247821
TU281351 lncRNA downstream 181154 1148527 ~ 1153982 (+) True G247889
CI01000058_00870909_00930600.mRNA mRNA upstream 36548 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_00847992_00862210.mRNA mRNA upstream 104718 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00728698_00738214.mRNA mRNA upstream 228210 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00652594_00653181.mRNA mRNA upstream 312245 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00592498_00596709.mRNA mRNA upstream 370335 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_01239590_01240099.mRNA mRNA downstream 272129 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_01248234_01262911.mRNA mRNA downstream 280861 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01266712_01271962.mRNA mRNA downstream 298380 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
CI01000058_01280337_01289153.mRNA mRNA downstream 311219 1278592 ~ 1289874 (+) False CI01000058_01280337_01289153
CI01000058_01298298_01311989.mRNA mRNA downstream 330703 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
TU280966 other upstream 369977 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 511404 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281473 other downstream 261236 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 485624 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 828340 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3727035 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3727089 4694462 ~ 4696910 (+) False G250039

Expression Profile