RNA id: TU281168


Basic Information

Item Value
RNA id TU281168
length 233
lncRNA type intronic
GC content 0.40
exon number 1
gene id G247711
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 970639 ~ 970871 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACGATGCAACGCGTAAAAAATCGATACCTGTGGGCTATTTATAGAAGCACCTTGTTTTAACACTCTCCACATTTTCACACAATGTCAGTCTATGCATTATAGACAACGTGTGCATTCTCGTTTAAACTACCTTTCAGAACTTGTGAAAGACGGTCGGAACAGTAGATGGAACTGTCACTAGCCGATAGTGCCAGTTCTGAATCTTCACGAAAGTTTATAATTACCTCGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281162 lncRNA upstream 3266 967148 ~ 967373 (+) True G247705
TU281153 lncRNA upstream 34194 936215 ~ 936445 (+) True G247696
TU281080 lncRNA upstream 38460 931004 ~ 932179 (+) True G247639
TU281140 lncRNA upstream 163327 806885 ~ 807312 (+) True G247683
TU281128 lncRNA upstream 176326 794088 ~ 794313 (+) True G247672
TU281180 lncRNA downstream 35854 1006725 ~ 1007170 (+) True G247723
TU281278 lncRNA downstream 63244 1034115 ~ 1034346 (+) True G247820
TU281279 lncRNA downstream 69240 1040111 ~ 1040344 (+) True G247821
TU281351 lncRNA downstream 177656 1148527 ~ 1153982 (+) True G247889
TU281373 lncRNA downstream 230295 1201166 ~ 1209951 (+) True G247910
CI01000058_00870909_00930600.mRNA mRNA upstream 40039 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_00847992_00862210.mRNA mRNA upstream 108209 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00728698_00738214.mRNA mRNA upstream 231701 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00652594_00653181.mRNA mRNA upstream 315736 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00592498_00596709.mRNA mRNA upstream 373826 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_01239590_01240099.mRNA mRNA downstream 268631 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_01248234_01262911.mRNA mRNA downstream 277363 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01266712_01271962.mRNA mRNA downstream 294882 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
CI01000058_01280337_01289153.mRNA mRNA downstream 307721 1278592 ~ 1289874 (+) False CI01000058_01280337_01289153
CI01000058_01298298_01311989.mRNA mRNA downstream 327205 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
TU280966 other upstream 373468 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 514895 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281473 other downstream 257738 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 482126 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 824842 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3723537 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3723591 4694462 ~ 4696910 (+) False G250039

Expression Profile