RNA id: TU281516


Basic Information

Item Value
RNA id TU281516
length 281
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G248027
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1400988 ~ 1401268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAGGCTTGGATGCAGCTGCTCGGCCATGGAAACCCATTCGATGAAGCTCTCTACGCACTGTTCTTGAGCTAATCTGAAGGCCACACGAAGTTTGGAGGTCTGTAGCTATTGACTCTGCAGAAAGTTGGCGACTTCTGCGCACTGTGCGCTTCAGCATGCGCTGACCTCGCTCTGTGATTTTAGGTGGCCTACCACTTCGTGGCTAAGTTGCTGTTGTTCCCAATTGCTTCCACTTTGTTATGATACCACTAACAGTTGACTGGAATATTTAGTAGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281443 lncRNA upstream 70128 1303301 ~ 1330860 (+) True G247960
TU281396 lncRNA upstream 110501 1289989 ~ 1290487 (+) False G247925
TU281397 lncRNA upstream 110544 1289989 ~ 1290444 (+) True G247925
TU281402 lncRNA upstream 126551 1265394 ~ 1265509 (+) False G247928
TU281403 lncRNA upstream 126551 1265394 ~ 1265509 (+) True G247928
TU281520 lncRNA downstream 2116 1403384 ~ 1403656 (+) True G248031
TU281524 lncRNA downstream 5388 1406656 ~ 1407006 (+) True G248035
TU281525 lncRNA downstream 7834 1409102 ~ 1409884 (+) True G248036
TU281417 lncRNA downstream 61015 1462283 ~ 1465887 (+) True G247934
TU281548 lncRNA downstream 66369 1467637 ~ 1485244 (+) False G248052
CI01000058_01391493_01394283.mRNA mRNA upstream 6569 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
CI01000058_01384467_01388274.mRNA mRNA upstream 12061 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01364846_01374544.mRNA mRNA upstream 26404 1364846 ~ 1374584 (+) True CI01000058_01364846_01374544
CI01000058_01348684_01352173.mRNA mRNA upstream 48400 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01298298_01311989.mRNA mRNA upstream 87942 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
CI01000058_01431719_01434294.mRNA mRNA downstream 30291 1431559 ~ 1434513 (+) True CI01000058_01431719_01434294
CI01000058_01496481_01498802.mRNA mRNA downstream 93602 1494870 ~ 1499810 (+) True CI01000058_01496481_01498802
CI01000058_01580247_01591754.mRNA mRNA downstream 178395 1579663 ~ 1592253 (+) True CI01000058_01580247_01591754
CI01000058_01625351_01664692.mRNA mRNA downstream 224083 1625351 ~ 1665794 (+) True CI01000058_01625351_01664692
CI01000058_01740599_01784355.mRNA mRNA downstream 339331 1740599 ~ 1784676 (+) True CI01000058_01740599_01784355
TU281473 other upstream 112718 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 803817 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 945244 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281423 other downstream 51729 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 394445 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3293140 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3293194 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3293194 4694462 ~ 4697161 (+) False G250039

Expression Profile