RNA id: TU281524


Basic Information

Item Value
RNA id TU281524
length 351
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G248035
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1406656 ~ 1407006 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAACACAACAGTTTATATAGGATAGGAGCATGGCAAAGCATTCTACAATATGATTGGTTCTTCATATGTCAAACCCTTCTGTTACCAGGTAAAGCAAGATCTGCCCAAATCATGTGTTTATTAGTTTGTTGGTTACTCAATATCATGGGGCTATTATATTTAGATAGTTGTCTAGCTGTCCCTAAATTTCATTTCCACTTTTCTTATATTTGGACATGATTCAGACACACACTGACTTAGGCCCAAGGTGGACTTTTAGGTTTAAAAAGCATATAAATGTTATTCCTGCAAGGAAAAAGAATGTTAGTTATGATTAATTAAAAAAAATTCTATCACAATCCTTACTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281520 lncRNA upstream 3000 1403384 ~ 1403656 (+) True G248031
TU281516 lncRNA upstream 5388 1400988 ~ 1401268 (+) True G248027
TU281443 lncRNA upstream 75796 1303301 ~ 1330860 (+) True G247960
TU281396 lncRNA upstream 116169 1289989 ~ 1290487 (+) False G247925
TU281397 lncRNA upstream 116212 1289989 ~ 1290444 (+) True G247925
TU281525 lncRNA downstream 2096 1409102 ~ 1409884 (+) True G248036
TU281417 lncRNA downstream 55277 1462283 ~ 1465887 (+) True G247934
TU281548 lncRNA downstream 60631 1467637 ~ 1485244 (+) False G248052
TU281549 lncRNA downstream 69079 1476085 ~ 1477545 (+) False G248052
TU281551 lncRNA downstream 70545 1477551 ~ 1503560 (+) False G248052
CI01000058_01391493_01394283.mRNA mRNA upstream 12237 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
CI01000058_01384467_01388274.mRNA mRNA upstream 17729 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01364846_01374544.mRNA mRNA upstream 32072 1364846 ~ 1374584 (+) True CI01000058_01364846_01374544
CI01000058_01348684_01352173.mRNA mRNA upstream 54068 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01298298_01311989.mRNA mRNA upstream 93610 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
CI01000058_01431719_01434294.mRNA mRNA downstream 24553 1431559 ~ 1434513 (+) True CI01000058_01431719_01434294
CI01000058_01496481_01498802.mRNA mRNA downstream 87864 1494870 ~ 1499810 (+) True CI01000058_01496481_01498802
CI01000058_01580247_01591754.mRNA mRNA downstream 172657 1579663 ~ 1592253 (+) True CI01000058_01580247_01591754
CI01000058_01625351_01664692.mRNA mRNA downstream 218345 1625351 ~ 1665794 (+) True CI01000058_01625351_01664692
CI01000058_01740599_01784355.mRNA mRNA downstream 333593 1740599 ~ 1784676 (+) True CI01000058_01740599_01784355
TU281473 other upstream 118386 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 809485 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 950912 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281423 other downstream 45991 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 388707 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3287402 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3287456 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3287456 4694462 ~ 4697161 (+) False G250039

Expression Profile