RNA id: TU281548


Basic Information

Item Value
RNA id TU281548
length 4861
lncRNA type inter_gene
GC content 0.45
exon number 20
gene id G248052
representative False

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1467637 ~ 1503560 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAGGTGTGGAACAACATGAGGGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGGAGCTCAAACTATCTTCAGACACAGAAAATGGCAATATTTACATTAACAACTCAATGAAAACAGTATGTTAAATAGAAAATTAAATACATTAAATAGAAAAAAATATATAATCACAAGGAAAATCACCCTGTTGAACAGGCACTAATAGAAAGCAATGTAGAGGAGAGAAAAGAAAGAAATATATACAAAATTCAAGCATAAATCAGACATTTTACCTTCTTGATTTCTGGTAAGACTGAAATTAGATGGTGTCAGACTGAAATTAGATGCAACAGCTTTAAAGAACTGTAGAATTATGCACATGGAATGATTTTAAATACTGTCAGATTTGACCTGCTACACTGAAAGTGCATTTCAGTTTGTACTTTATTAGTTGATGCCACAGTATTGAAAGAATTTTTAGATTAGTCTTAATTAATTAAAAAAATAATAATATTAACATAAGTAAGAAAAAAAATCTATGTCTATGTTGTTTTTTAAAGGCAGAGCTGGACTATGGACCAGGCAAGTGTCCTGGGACCTCAGACTGTCAGGGGCCTCCAAACACTATAAACAGACCCCAGACCCCCAGAAACCCTCACTAGGACCCACATAATTTAATGTTAGCCATATGTTTCCTAATTCCTTAAGCCCAATGGAACCTTATTACTTAAAGTATAAGGATTCCACCATTAGTGGCAGCCTCCAAGACAATGACTCAGTCCTTGGAAGAAAACAATACCTTATAATAAATTATGATATTATAGGATAATAATTAACTTGTTTGCCCATGAATGTTATCTTCAGTATTGATCAATGTCCAGTGTCTTGTAATGTGACAAGAAAGAAAGTAACAGCCCATGAACGTCATTTTTCTGTAAGCCTTGAGGAAAAAAGGCAATAATAATAATGAATGAGATAACAGAGTGATAACTTTGGCAAGCCAAGCCCACTTTAACAACCACACAAAAATCAGCTTCTGTTGTACCGCTGTGTTCATGAGACCTTTCATCTTTAAAAACTAGAACACTGAGGGAAAGGCAGAATGCTACAATCATTCAACACAGATACAAAACACTGTTAATAAAAATCATGATCCCCTCTTGCTTCCAATTACATCGTCACAAAAAATTAAAAGAATAAATAAAAAAGGTAAACACTCATTTGGATCATTTTGCAGTCCACATGCTGCCATGAAGTAGCAACAAAGTATTAAAAAAGGTTTTGTTTTATCCAGTATGGAATGTCACCAATACATCTATGTGTATTTACACCTATGAGGAAATCAACAAGTCAGAGCTGTTGTTGGATTTTAGAAACTACAACCAAATGCTGACAAGACCACCAGTCAAGTTTGAGTTTCCATAAGGCAAGCATCTAAAATTATAACACAATCAAAAAGTCTTCCACAACAACTCTCTTGGTATTCCACAATGACCAGTCATCCTTGTAAAAAAGCCTTTTTATACAAAAGAATCCTCTACCTCTCAAAATTTCTAAAACTTTGCACCCCACGCAACCATTCTGACGTCCCTCATCAAAATCCCCACCACCCACAGCCCAGCCCCTTCTGAGGAAAACCTGCTCCATTCTCTGTGATATTAATAAGAAATGCCTCATCATTGGCTAACATCACAGTCCTGACGAGCCAATGAGAACGAGTGCAGTGACCACCAGAACAGACGTGCAGAGGGGTCCTGAAGTGCCAGCGCTTTTCTGGACCATCATTCCAGTGCCTGAGTCTCGAGACACTATGGTCTCATGGGCTGCTCCATCTCCTCCATCTCCCCAAGAGCGGATCTCCAGAACCACATAAGCATTGTCCTTGGGTAACGGCAGTCTGATGGAGGTCTTGCTTTTCTCTAGTATCTTCAAGGCAGACTGCCCTTCATGCTTGTAAAGGACTTTGTAACCCAGAACAGCAGACTCATTGTCCATGGATTTAACATGATCCCACCTCACAGTAACCCAAGAACCATCAACTTTCCATGAGACATTACCTGGAGGACGGTTGGGGGGAGGTTTCTTGGTGATGACAGTAGTTCTCGGGGAGGGTGGGCCAGTGCCTGCGCTGTTGTAGGCCAATACGGTGACGTGATAAAGAGTGTTAGGCCTCAGACCCGTGACACGTGCCGTGTTCTCCAGCCCTGCAGTTCTCACCCGGTCTGCAGCTGCCTCACGTTCATGTTGCCGCCAATAACGAATCTCATAACCCCGAAGAACTCCATTAATGTTCAGATGTTGAATGGGGTCCCAGGACACCTGAATCTCAAAAGCTGTCAGAGCAGTGGCGTTAATCCTTCGTGGGGACACAGTAGGTTCCTCTTCTGCAGAGTGTACTACTGCAATCTGGCTGAAGGGACCTTCTCCTTTCTTGTTGTAGGCCTTGATTCTGACCTCAAAAGGGCAGTAGGCTGACAGACTCTCATTGCTGTAAACATATCGTGATGACTCCACATGTGGCACCCTCACCACCGTCCATGTTGGCATGCCTTGCTTTCTGAACGCCAGGATATAACCAAAGCCATCTCCATTCTGATACTCCCTGACCATAGGAGTCCATGTAATGATAAGTTCATTACGGTTTCCTCCACCTCCACCAAGTCCGCTGGGCGCCACAGTCGGTGCTGCTTGTTTGGTTCGGACAGGCTGGGAGGGCATACTTGGTTCTCCACTTCCTAGGATGTTGCTAGCAATGACCTGGAACTCATAATCCATCCAGGGTCGAAGATCTATCACACGTGCAGATTCAGCATTTCCTTCTATGTTTGCAGGGTCTGTCCTCATCCTCTTCCAGTCATGAGCCTGTGACGAGCGGCCCAGGATGATATACTTGCCAATGGGACTGTGATTGTCATATCCACGGCTCCATCTCAACTCAACCGATGTGTCGTTGACACTAGTCACCACTAAACCTCCAGGAGGTCCTGGTGGGCCCCTCACGACTAGCTTGGCCGAGGCCACCGCACTGTCCACCACCGTCTGGGCCGTGCAGGTGTATGTCCCAGCATGACTGAGCTGTCCGTTCATAATCACCAGGTCACCGATCGTCTCTTTCCCCTCCATGCGCCGATAGTGTCCATTTGGTTCCTCTAGGTCCAAGAGAACTCCATTGAGGGCCCAGGTGAAGGTGAGGTCCATAGTAGGGTCATGTGATGCATGGCATTGCAAAGTGACATTTTCACCCTGATTGATGTCAGCATTAGAGGGTGCTAGTGTGATTTTTGTGGCATCTCTGACAGACAGGTGTCCTGTGCTGTTGGCCTTGCCAAGGTAGTTTTCTGCAAAGCAGGTGTACTTCCCCTCATCTGCACGACTGATGTTGAAGATCCACAGAACCCCATCTGGAGTGACTGTTATCCTAGTACTATTGGTCAGTAGCTCTGTGCCACGACTCCAGAAGAGAGTGGGTTTGGGAGCCGCCCGAGGTTTACACTCCATTTTAACCTGTCCACCACGGGCAGCAGGGACCAGCTTACGCACTGGATTTAACCTGAAGTCCGGAGCCTGGACTTGAACTCTGAGCTCAGCGTTTGAGTAAATGGTGCCGTGTTTGTTTTCGGCCACACATTGATACATCCCAGAATCCTCCAGGGCGAGGTTACCGATCCTCAGACGCCCGTTATTCACTTCCACACGGTCCTGTGTGATGAGGGGCTGTCCGTTACGGAGCCAGCGAATGGTGGGTCTTGGTTTGCCCGCAGCGGCACAGCTCCACTGTAGCTCTGAACTGATTTCCACCTCAGAGTCACTCATGACCTGAAGCCACTCAGGCTGGGCTTGCACAGAGATGCGTCCCTGGTGTGTCTCACGGCCCTCTAAGTTGTAAACCTCACACTCATACATGCCCTCGTCATCAAAATTCAGCTCAGGAATAATTAGGATGGGTCCTTCTACACTTGCTCCGACTTTAGGGGGCAAAATCCCATCCACCTTCCTCCAGCGGATTTTAGGAATGGGATTGCCATAGGCAAAACATTCCAGCTGTGCAGTTTGTCCTGATAATGCGTATGTCTCAGCAGGAAAACGCACTCGGATATTCGGGGAGGCTTTCCTTGGGTTTGCTTCAGGGTAAACAGTGAGCTGGACGGCTTTGCTGAAGATGCTCTTGGTGCTGATGTCCATATTGATGGTGGTGAAGCAGAAATAGTTGCCCGTGTCATTGGCTTTAGCATTAGCAAGGTATAAGTTACCCGTCACCTGAGAAACAAACCATCTGCCTGCCTCTGGCTGGATGAAGTTGGGGAACTCATTGATGAACCAGCGGTAGGACAAAGCTGGGTAATGAGCTGGTGGCTGGCAGGCAAGGAAGGTTCCCATACCCTCATGGACCGTCTGAGGGCTTCTGCTCTCAGGAGGAAAATCATGGAGATAGCCGAATTTGAGGTTAGCCACACGGCTAACAATGGTGCCACAGCGGTTGATGGCGAGACACTGGTATGACCCACCATCTCGCCCATGCTGAGGATTATTGATCACAAGGTTTCCTGCGACCTGTGTGTACTGCGAATCCTCAACAAATGCTATTTCAGTGCCATTCACACGCCACCTGTGAGAAATCACATATGAGATCTAACTTCAATAGCCAGGAGATGGTCAAAAAGTGGATAATCAATCATTTATTTATTAGTGGCAAACAAGTAGTACACTTTGCAGACAATGTATTTAAAAATAGTTTTTTTAAGGAGTTTTTTAAATACTTAAGAAGCAAACTTGTATATTGAAACATTTTTTCAGAGAATATATCTTGAATCAGGTTTATTTTTCATACCCCAGTGACAAATAGTTTTGTTTTGTTTGTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281417 lncRNA upstream 1750 1462283 ~ 1465887 (+) True G247934
TU281525 lncRNA upstream 57753 1409102 ~ 1409884 (+) True G248036
TU281524 lncRNA upstream 60631 1406656 ~ 1407006 (+) True G248035
TU281520 lncRNA upstream 63981 1403384 ~ 1403656 (+) True G248031
TU281516 lncRNA upstream 66369 1400988 ~ 1401268 (+) True G248027
TU281476 lncRNA downstream 6935 1492179 ~ 1550850 (+) True G247993
TU281606 lncRNA downstream 131332 1616576 ~ 1617014 (+) True G248103
TU281609 lncRNA downstream 132107 1617351 ~ 1617920 (+) True G248104
TU281619 lncRNA downstream 191613 1676857 ~ 1677153 (+) True G248112
TU281431 lncRNA downstream 201535 1686779 ~ 1706383 (+) True G247948
CI01000058_01431719_01434294.mRNA mRNA upstream 33124 1431559 ~ 1434513 (+) True CI01000058_01431719_01434294
CI01000058_01391493_01394283.mRNA mRNA upstream 73218 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
CI01000058_01384467_01388274.mRNA mRNA upstream 78710 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01364846_01374544.mRNA mRNA upstream 93053 1364846 ~ 1374584 (+) True CI01000058_01364846_01374544
CI01000058_01348684_01352173.mRNA mRNA upstream 115049 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01496481_01498802.mRNA mRNA downstream 9626 1494870 ~ 1499810 (+) True CI01000058_01496481_01498802
CI01000058_01580247_01591754.mRNA mRNA downstream 94419 1579663 ~ 1592253 (+) True CI01000058_01580247_01591754
CI01000058_01625351_01664692.mRNA mRNA downstream 140107 1625351 ~ 1665794 (+) True CI01000058_01625351_01664692
CI01000058_01740599_01784355.mRNA mRNA downstream 255355 1740599 ~ 1784676 (+) True CI01000058_01740599_01784355
CI01000058_01794468_01800421.mRNA mRNA downstream 309224 1794468 ~ 1800421 (+) False CI01000058_01794468_01800421
TU281423 other upstream 11190 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 179367 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 870466 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1011893 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281441 other downstream 310469 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3209164 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3209218 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3209218 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 3209218 4694462 ~ 4697032 (+) True G250039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006709 True 3123 mRNA 0.50 34 NC_007122.7 23957440 ~ 23987682 (+)