RNA id: TU281476


Basic Information

Item Value
RNA id TU281476
length 338
lncRNA type read_through
GC content 0.43
exon number 3
gene id G247993
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1492179 ~ 1550850 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGTATGGACCAGTCTCCTTTAAGACCACCTGGGATAACATCAGGAGCTGAAACAAATCATTATATGCACCCAGGTGAGTCTGACACTACGTGCTGAAGGGTCCGAGAGCTCAAGATCCTGAGGAGGGTCGGGTCGACCTGGAAGAGAACAGTATACTAAATTAGCCATGTTAACTTACAACAGCACTAATTATTCTCAGAGGTTAAAAAACAGATTGATTGTTAGAGGCTTTAATTGGACATTAGAAATAACTGTCCTAGATATGTTACCTGCAGAGGCACTACGATTTGAGGCAGAAGAGATGTCATCCTCTATGAGGTAAAGGTCAAAGGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281548 lncRNA upstream 6935 1467637 ~ 1485244 (+) False G248052
TU281549 lncRNA upstream 14634 1476085 ~ 1477545 (+) False G248052
TU281417 lncRNA upstream 26292 1462283 ~ 1465887 (+) True G247934
TU281525 lncRNA upstream 82295 1409102 ~ 1409884 (+) True G248036
TU281524 lncRNA upstream 85173 1406656 ~ 1407006 (+) True G248035
TU281606 lncRNA downstream 65726 1616576 ~ 1617014 (+) True G248103
TU281609 lncRNA downstream 66501 1617351 ~ 1617920 (+) True G248104
TU281619 lncRNA downstream 126007 1676857 ~ 1677153 (+) True G248112
TU281431 lncRNA downstream 135929 1686779 ~ 1706383 (+) True G247948
TU281430 lncRNA downstream 163434 1714284 ~ 1733492 (+) True G247947
CI01000058_01431719_01434294.mRNA mRNA upstream 57666 1431559 ~ 1434513 (+) True CI01000058_01431719_01434294
CI01000058_01391493_01394283.mRNA mRNA upstream 97760 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
CI01000058_01384467_01388274.mRNA mRNA upstream 103252 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01364846_01374544.mRNA mRNA upstream 117595 1364846 ~ 1374584 (+) True CI01000058_01364846_01374544
CI01000058_01348684_01352173.mRNA mRNA upstream 139591 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01580247_01591754.mRNA mRNA downstream 28813 1579663 ~ 1592253 (+) True CI01000058_01580247_01591754
CI01000058_01625351_01664692.mRNA mRNA downstream 74501 1625351 ~ 1665794 (+) True CI01000058_01625351_01664692
CI01000058_01740599_01784355.mRNA mRNA downstream 189749 1740599 ~ 1784676 (+) True CI01000058_01740599_01784355
CI01000058_01794468_01800421.mRNA mRNA downstream 243618 1794468 ~ 1800421 (+) False CI01000058_01794468_01800421
CI01000058_01838039_01842964.mRNA mRNA downstream 287189 1838039 ~ 1843230 (+) True CI01000058_01838039_01842964
TU281423 other upstream 35732 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 203909 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 895008 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1036435 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281441 other downstream 244863 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3143558 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3143612 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3143612 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 3143612 4694462 ~ 4697032 (+) True G250039

Expression Profile