RNA id: TU281606


Basic Information

Item Value
RNA id TU281606
length 439
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G248103
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1616576 ~ 1617014 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATAAAAAGTTATATTTTTGTATATACATAACTCCTGAATAAAATTAAAATGTGTTTGGACTGATTTAAAAAAAAAGTTTTGAACAAATTTGATTGGTTTGTCGATAGTGAGCGCAAATGCAGGTGATAAGCGGTTTTATTAAGCGAGTCATTGAGTCGTTCATTCACGATTCGTTCAAACGGCCGATTCATCAAGAATGAGACAGATGTTTGTGAATGGGTCATTGAATCTTTGACTCAAACGATTTGTTCAAAACACTGAATCATTCAAAACACAATTGAGTGTTGCTGTGAGATGCGCTATGTTGTGATCTTTGTTTGGATTCATCGGATCTGCTAAAATAGACCAAAACAGTCATTATTTCGTCTAAAATGTAAGTGACTTAATATTATTAACTTGTTTGTTGAACTGTCATATCAGTGTCACATTTTCAATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281476 lncRNA upstream 65726 1492179 ~ 1550850 (+) True G247993
TU281551 lncRNA upstream 113016 1477551 ~ 1503560 (+) False G248052
TU281550 lncRNA upstream 113016 1483384 ~ 1503560 (+) True G248052
TU281548 lncRNA upstream 131332 1467637 ~ 1485244 (+) False G248052
TU281549 lncRNA upstream 139031 1476085 ~ 1477545 (+) False G248052
TU281609 lncRNA downstream 337 1617351 ~ 1617920 (+) True G248104
TU281619 lncRNA downstream 59843 1676857 ~ 1677153 (+) True G248112
TU281431 lncRNA downstream 69765 1686779 ~ 1706383 (+) True G247948
TU281430 lncRNA downstream 97270 1714284 ~ 1733492 (+) True G247947
TU281458 lncRNA downstream 130756 1747770 ~ 1752339 (+) True G247975
CI01000058_01580247_01591754.mRNA mRNA upstream 24323 1579663 ~ 1592253 (+) True CI01000058_01580247_01591754
CI01000058_01496481_01498802.mRNA mRNA upstream 116766 1494870 ~ 1499810 (+) True CI01000058_01496481_01498802
CI01000058_01431719_01434294.mRNA mRNA upstream 182063 1431559 ~ 1434513 (+) True CI01000058_01431719_01434294
CI01000058_01391493_01394283.mRNA mRNA upstream 222157 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
CI01000058_01384467_01388274.mRNA mRNA upstream 227649 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01625351_01664692.mRNA mRNA downstream 8337 1625351 ~ 1665794 (+) True CI01000058_01625351_01664692
CI01000058_01740599_01784355.mRNA mRNA downstream 123585 1740599 ~ 1784676 (+) True CI01000058_01740599_01784355
CI01000058_01794468_01800421.mRNA mRNA downstream 177454 1794468 ~ 1800421 (+) False CI01000058_01794468_01800421
CI01000058_01838039_01842964.mRNA mRNA downstream 221025 1838039 ~ 1843230 (+) True CI01000058_01838039_01842964
CI01000058_01957358_02009847.mRNA mRNA downstream 340344 1957358 ~ 2009847 (+) True CI01000058_01957358_02009847
TU281423 other upstream 160129 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 328306 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 1019405 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1160832 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281441 other downstream 178699 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3077394 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3077448 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3077448 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 3077448 4694462 ~ 4697032 (+) True G250039

Expression Profile