RNA id: TU281642


Basic Information

Item Value
RNA id TU281642
length 228
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G248135
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1851674 ~ 1851901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTATTGAAGAAACTCATTATTGGATGTTACATTTAGTTCATTTTACAATTTATTGTTCCATTGTGTATTATTAAAGACATGAATGAGAATTGATCCATTTAAATTGCTGTACAAAATTACTAATGGAAAGAGCATGTATTTCCAGAATAGCAAGAAAAGAAAATCGATGGTTATTCTGATTACTTATATAAAGAAATATTCAAGTAGCTGTGGAGCATGTAAGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281635 lncRNA upstream 14152 1837308 ~ 1837522 (+) True G248128
TU281629 lncRNA upstream 19306 1832069 ~ 1832368 (+) True G248122
TU281625 lncRNA upstream 27684 1823789 ~ 1823990 (+) True G248118
TU281458 lncRNA upstream 99335 1747770 ~ 1752339 (+) True G247975
TU281430 lncRNA upstream 118182 1714284 ~ 1733492 (+) True G247947
TU281645 lncRNA downstream 4409 1856310 ~ 1856528 (+) True G248138
TU281646 lncRNA downstream 5783 1857684 ~ 1858066 (+) True G248139
TU281647 lncRNA downstream 7833 1859734 ~ 1859980 (+) True G248140
TU281659 lncRNA downstream 25078 1876979 ~ 1877182 (+) True G248152
TU281460 lncRNA downstream 29279 1881180 ~ 1927032 (+) True G247977
CI01000058_01838039_01842964.mRNA mRNA upstream 8444 1838039 ~ 1843230 (+) True CI01000058_01838039_01842964
CI01000058_01794468_01800421.mRNA mRNA upstream 51253 1794468 ~ 1800421 (+) False CI01000058_01794468_01800421
CI01000058_01740599_01784355.mRNA mRNA upstream 66998 1740599 ~ 1784676 (+) True CI01000058_01740599_01784355
CI01000058_01625351_01664692.mRNA mRNA upstream 185880 1625351 ~ 1665794 (+) True CI01000058_01625351_01664692
CI01000058_01580247_01591754.mRNA mRNA upstream 259421 1579663 ~ 1592253 (+) True CI01000058_01580247_01591754
CI01000058_01957358_02009847.mRNA mRNA downstream 105457 1957358 ~ 2009847 (+) True CI01000058_01957358_02009847
CI01000058_02028188_02037502.mRNA mRNA downstream 176248 2028149 ~ 2037628 (+) True CI01000058_02028188_02037502
CI01000058_02052152_02085378.mRNA mRNA downstream 200062 2051963 ~ 2085455 (+) False CI01000058_02052152_02085378
CI01000058_02227590_02229507.mRNA mRNA downstream 375517 2227418 ~ 2230021 (+) True CI01000058_02227590_02229507
CI01000058_02348646_02354404.mRNA mRNA downstream 496714 2348615 ~ 2355085 (+) True CI01000058_02348646_02354404
TU281441 other upstream 53942 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 395227 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 563404 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 1254503 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1395930 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 2842507 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 2842561 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 2842561 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 2842561 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 2974475 4826376 ~ 4849531 (+) True G250094

Expression Profile