RNA id: TU281717


Basic Information

Item Value
RNA id TU281717
length 2345
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G248208
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2090257 ~ 2092730 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGTAGGAGTGTGTTTATTCTTTGAACCACTTCTGTAAATAAGAGCTTGACTACAGCAAGGATCACAGGAAGATGTTGGATTAGCACATGATAAAGAGGGAGAATGAAAAGCATGTGATTGGAGACAAGAGTTGCTTTCTTGTCATGGTGGCTTACAGAGCTGCGTACGTGTCAGTGTGTGTGTCCTCCTCCCAGACTGCTGGTAAAGAAAGCAATAGCAGGCCTAAATAGCCATTAGTGTGCTAAGCTTGAAGGAGCTGCTTTTAAATATGCAGCGAGGAAAGCCTCACACAGTGCTAAAACATGAAGAAGGGAGACTGACACCATCACCATAAGCAGCCTGATTTTGAGACCCAATCTTTCCCGGCATATGGTCCTACATGAATGACAGGAGTGCACATTTTGTCAGTACTCCTAAAAGCTTTATTTTGAACAGACAAATTGGAATACATTTATGCCATTTTGTAATTTTAATGGATTTCAGTGTTGCCATATCCTCTTTTGTACTCGATTTTGGGCTTGTTTTCATAGACGCTAATAAATATGGGCATCCAGGGAAGAGGGAACATTGTCAGAATTCTGAAAACTTCCCTTATGTTCTGGCAAGATTCTCTCAAAGATATAAACAAGCATTTCTCCAGTAACATTAATAGAACTTTTGTTCAAAGTTATCTAGTCTTTAATAATGTTCTCAAAATGTTAGCACAAAAACTTTAGTTATGTTTTCATAGCGTTAGCAAAACCTTCATTTTTTGTTAGCTGGGCAGTTGTAGACTACATTGTTTTTGAGTTTTTTTTTTCTAGAATGCAGTCACATACAGTTTGTTTTTTACTTCATGGGCTGTATGTGCTAGTCAAACATGAATGGAAATGCTAATGCTAACTGTGTAGAAGTCTTTGATTGATATATGGTTTGTTTTTCTCCTTTTTCCATTTGTCCGTCACATTTCAACTGAGAAACCTGTGAGTATGTCTTTATTTATTTTACTTAACACTTGCTTTTTACACGATAGGCCATTAAAGTGTCCTGCTTCTCAATCCTTTTACATGTCTAACCATAAAGAGGGCAGTAAAATGCTCCAGCCTTGACCCTGCTTGTATTTGTCTATACATCAATAAAAGCTGGTTAGATCTCTGCCGACAGCCACATGGTACGAGCATTCAGTGAGATTTGTGGGTCTTGCCCCCTGCAAATAATACGTTAACTTGCACAGCATCAGCTTCTGTGTAGAGTCTTCTTTCTTTCTTTCTTCCTTCAGTCTGACAGTTTTGCATCTTCACTCTAATTGCAGAAAGGTGTTTGGGAAATTATCTTGGCACAATCCCCAAATGACAAATTAGTTTGCATTAGTGTGTGGATCCATCCAGATCCTTCCAATTACTTCCTGTATGTAATCAGACTTATTACAGCGCCCTGCTGTGTTTGAGGGTTTTTTCTATCATCGCAACTTTCAAGGAAAAAATAAAGGTTTTGCGAACTGTGGGAATATGCTGATCCAATTTTGGGCTTTTTATCGGCAATGAGTCTCCGTAAATCAGAGCAAGTTTAAGAAGGGAACTGTCTGCTTTTAATAAATGGCCTGGCCATAACTTTTCTTTGAGAAACAAGCGTATTGAAGAATATAATTTAATTTCTCGTTTAAATGGCTCAATGAATCAGATAAGAGTAGCGTGCTCGGAGGCAAAGGATGGCACATGAAATTAAATGGAAGCGGAGGAAGGTAGGAGTGTAAAATGGGGGACGTCAACATCAGGCATGTCATTTAAATCAATGTGCTACCTATCAACACCAGCATGCCTTGCAACCTCAGATGTGTGACAGTATCTCTCTTTATAGGTCTGCTCCGCTTTCCTCTGTGGAGAACTGTAAAATCAGCACACACTTTTTGATTAAAACTTTAGCTCCACAGAATTGGAAAAGTAACCATAAAATTCTAAAAGTGCCTTGGGACATTAATTTATTATTTGATTTATTAATTCTTTCAGCTACCAACAGGGTTCCATCCATCCATCCATCCATCCATCCAGTTTCAGAGTTCCAAACAAGCCCTGACTCTTAAAGTGAGTGAATAAGTTCACTTACTGTACACTACCATCCACAAATTTAGGGTTGGTATAGTTTTTTTTTTTTTTTTATGTTTTTGAATTATGTTTCTTTACCAGTTTTTAGTGTCACATGATATTTCAGAAATAATTTTAAAGAGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCATCCTCAAGTTGTTCCAAACCTGTATAAATTTCCTTGTTCTGCTGTACACAAAGGAAGATATTTGGAAGAATTTTTGTAACCAAGCAGATCTTGCCCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281690 lncRNA upstream 29033 2059042 ~ 2061224 (+) True CI01000058_02052152_02085378
TU281452 lncRNA upstream 33966 2003297 ~ 2056291 (+) True G247969
TU281474 lncRNA upstream 87090 1998870 ~ 2003167 (+) True G247991
TU281433 lncRNA upstream 148989 1927222 ~ 1941268 (+) True G247950
TU281460 lncRNA upstream 163225 1881180 ~ 1927032 (+) True G247977
TU281828 lncRNA downstream 144180 2236910 ~ 2237437 (+) False G248303
TU281829 lncRNA downstream 144180 2236910 ~ 2237958 (+) True G248303
TU281885 lncRNA downstream 224488 2317218 ~ 2321912 (+) True G248356
TU281901 lncRNA downstream 305956 2398686 ~ 2398891 (+) True G248372
TU281902 lncRNA downstream 307655 2400385 ~ 2400642 (+) True G248373
CI01000058_02052152_02085378.mRNA mRNA upstream 4802 2051963 ~ 2085455 (+) False CI01000058_02052152_02085378
CI01000058_02028188_02037502.mRNA mRNA upstream 52629 2028149 ~ 2037628 (+) True CI01000058_02028188_02037502
CI01000058_01957358_02009847.mRNA mRNA upstream 80410 1957358 ~ 2009847 (+) True CI01000058_01957358_02009847
CI01000058_01838039_01842964.mRNA mRNA upstream 247027 1838039 ~ 1843230 (+) True CI01000058_01838039_01842964
CI01000058_01794468_01800421.mRNA mRNA upstream 289836 1794468 ~ 1800421 (+) False CI01000058_01794468_01800421
CI01000058_02227590_02229507.mRNA mRNA downstream 134688 2227418 ~ 2230021 (+) True CI01000058_02227590_02229507
CI01000058_02348646_02354404.mRNA mRNA downstream 255885 2348615 ~ 2355085 (+) True CI01000058_02348646_02354404
CI01000058_02379628_02392648.mRNA mRNA downstream 285854 2378584 ~ 2392780 (+) True CI01000058_02379628_02392648
CI01000058_02578534_02589495.mRNA mRNA downstream 485331 2578061 ~ 2590541 (+) True CI01000058_02578534_02589495
CI01000058_02592534_02600835.mRNA mRNA downstream 498463 2591193 ~ 2601755 (+) True CI01000058_02592534_02600835
TU281441 other upstream 292525 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 633810 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 801987 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 1493086 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1634513 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 2601678 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 2601732 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 2601732 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 2601732 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 2733646 4826376 ~ 4849531 (+) True G250094

Expression Profile