RNA id: TU281829


Basic Information

Item Value
RNA id TU281829
length 266
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G248303
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2236910 ~ 2237958 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGTCCGTTCCCAATGCTAAGAGGTTATTGAACTCCCTGTCCAGAATCTGCCTAGCCTGGGTGTTTTGCATGGGGATCTGTAGAATGAGGGCCAAGCTGCTGAAGTCAAATGTCTCATCTAAGGCAATGAGAGCTCCGTGCACGCCGCTTTCCAGCAGGTTATTACTGTATTCCTTCAGACCAATGTTCTGAACCCACTGCATCACATGATCATTGGTCCACACCAGGGTATCTTTGATGTCATGTTGGAAATCATCTCTTCTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281717 lncRNA upstream 144180 2090257 ~ 2092730 (+) True G248208
TU281690 lncRNA upstream 175686 2059042 ~ 2061224 (+) True CI01000058_02052152_02085378
TU281452 lncRNA upstream 180619 2003297 ~ 2056291 (+) True G247969
TU281474 lncRNA upstream 233743 1998870 ~ 2003167 (+) True G247991
TU281433 lncRNA upstream 295642 1927222 ~ 1941268 (+) True G247950
TU281885 lncRNA downstream 79260 2317218 ~ 2321912 (+) True G248356
TU281901 lncRNA downstream 160728 2398686 ~ 2398891 (+) True G248372
TU281902 lncRNA downstream 162427 2400385 ~ 2400642 (+) True G248373
TU281903 lncRNA downstream 163905 2401863 ~ 2402123 (+) True G248374
TU281913 lncRNA downstream 178295 2416253 ~ 2416481 (+) True G248384
CI01000058_02227590_02229507.mRNA mRNA upstream 6889 2227418 ~ 2230021 (+) True CI01000058_02227590_02229507
CI01000058_02052152_02085378.mRNA mRNA upstream 151455 2051963 ~ 2085455 (+) False CI01000058_02052152_02085378
CI01000058_02028188_02037502.mRNA mRNA upstream 199282 2028149 ~ 2037628 (+) True CI01000058_02028188_02037502
CI01000058_01957358_02009847.mRNA mRNA upstream 227063 1957358 ~ 2009847 (+) True CI01000058_01957358_02009847
CI01000058_01838039_01842964.mRNA mRNA upstream 393680 1838039 ~ 1843230 (+) True CI01000058_01838039_01842964
CI01000058_02348646_02354404.mRNA mRNA downstream 110657 2348615 ~ 2355085 (+) True CI01000058_02348646_02354404
CI01000058_02379628_02392648.mRNA mRNA downstream 140626 2378584 ~ 2392780 (+) True CI01000058_02379628_02392648
CI01000058_02578534_02589495.mRNA mRNA downstream 340103 2578061 ~ 2590541 (+) True CI01000058_02578534_02589495
CI01000058_02592534_02600835.mRNA mRNA downstream 353235 2591193 ~ 2601755 (+) True CI01000058_02592534_02600835
CI01000058_02629861_02631891.mRNA mRNA downstream 391732 2629690 ~ 2632294 (+) True CI01000058_02629861_02631891
TU281441 other upstream 439178 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 780463 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 948640 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 1639739 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1781166 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 2456450 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 2456504 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 2456504 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 2456504 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 2588418 4826376 ~ 4849531 (+) True G250094

Expression Profile