RNA id: TU281903


Basic Information

Item Value
RNA id TU281903
length 261
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G248374
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2401863 ~ 2402123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTAAATGCCCTCCTCTGTGTTTGACTAGTAAAATTAATGCAAAAACCGATACTTCAAATCAACATTTCAAACCAAAAAAAATCTAAACCTTGACAAAAAGTAGTCTTTGAGAATGTTTAAGTATAAATCCAAATCCAAAACTTAATAAAAATAAGTATTTGTGTCTAAAAAACACTAGAGAATTTATAAGCCACTTTATATAGAACTATATAAGAATCTAGTGGTTACAACATGGCATTACATAAGTTTTTCTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281902 lncRNA upstream 1221 2400385 ~ 2400642 (+) True G248373
TU281901 lncRNA upstream 2972 2398686 ~ 2398891 (+) True G248372
TU281885 lncRNA upstream 79951 2317218 ~ 2321912 (+) True G248356
TU281829 lncRNA upstream 163905 2236910 ~ 2237958 (+) True G248303
TU281828 lncRNA upstream 164426 2236910 ~ 2237437 (+) False G248303
TU281913 lncRNA downstream 14130 2416253 ~ 2416481 (+) True G248384
TU281933 lncRNA downstream 53564 2455687 ~ 2456585 (+) True G248404
TU281934 lncRNA downstream 56924 2459047 ~ 2459397 (+) True G248405
TU281935 lncRNA downstream 58793 2460916 ~ 2461548 (+) True G248406
TU281961 lncRNA downstream 97987 2500110 ~ 2500317 (+) True G248432
CI01000058_02379628_02392648.mRNA mRNA upstream 9083 2378584 ~ 2392780 (+) True CI01000058_02379628_02392648
CI01000058_02348646_02354404.mRNA mRNA upstream 46778 2348615 ~ 2355085 (+) True CI01000058_02348646_02354404
CI01000058_02227590_02229507.mRNA mRNA upstream 171842 2227418 ~ 2230021 (+) True CI01000058_02227590_02229507
CI01000058_02052152_02085378.mRNA mRNA upstream 316408 2051963 ~ 2085455 (+) False CI01000058_02052152_02085378
CI01000058_02028188_02037502.mRNA mRNA upstream 364235 2028149 ~ 2037628 (+) True CI01000058_02028188_02037502
CI01000058_02578534_02589495.mRNA mRNA downstream 175938 2578061 ~ 2590541 (+) True CI01000058_02578534_02589495
CI01000058_02592534_02600835.mRNA mRNA downstream 189070 2591193 ~ 2601755 (+) True CI01000058_02592534_02600835
CI01000058_02629861_02631891.mRNA mRNA downstream 227567 2629690 ~ 2632294 (+) True CI01000058_02629861_02631891
CI01000058_02635467_02636768.mRNA mRNA downstream 233053 2635176 ~ 2636985 (+) False CI01000058_02635467_02636768
CI01000058_02650808_02653235.mRNA mRNA downstream 248313 2650436 ~ 2653371 (+) True CI01000058_02650808_02653235
TU281441 other upstream 604131 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 945416 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 1113593 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 1804692 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1946119 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 2292285 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 2292339 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 2292339 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 2292339 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 2424253 4826376 ~ 4849531 (+) True G250094

Expression Profile