RNA id: TU282050


Basic Information

Item Value
RNA id TU282050
length 288
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G248516
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2673375 ~ 2673662 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAGAATAAAAACCCTTCCTACACCTTTGTTACATGTCTTGTGTTTCTGTGACCTAGTTTTCCCCAGTTTGTTTGATTAGTTCATTTGATTCACCTGTCTAGTTAATCATCTCATCACCTCGTTAAGTTCCCTTTGTTTGTCACATGTATTTAAACCCAGTGTTCTCCTTCACTCCTTGTCCGTTCTCGCTTACTTTTACGTTAACTTGTATGTTATGCTGTCTCTACCCTGTTGGAATCTCCTGTGTTTGATTAAAGACCTACTCGTATACTCATCTTCATCTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282012 lncRNA upstream 36462 2609762 ~ 2614618 (+) True G248483
TU281961 lncRNA upstream 173058 2500110 ~ 2500317 (+) True G248432
TU281935 lncRNA upstream 211827 2460916 ~ 2461548 (+) True G248406
TU281934 lncRNA upstream 213978 2459047 ~ 2459397 (+) True G248405
TU281933 lncRNA upstream 216790 2455687 ~ 2456585 (+) True G248404
TU282053 lncRNA downstream 11613 2685275 ~ 2685634 (+) True G248519
TU282110 lncRNA downstream 193560 2867222 ~ 2878788 (+) True G248574
TU282102 lncRNA downstream 217689 2891351 ~ 2908197 (+) True G248566
TU282130 lncRNA downstream 290831 2964493 ~ 2964823 (+) True G248594
TU282149 lncRNA downstream 434111 3107773 ~ 3108154 (+) True G248613
CI01000058_02650808_02653235.mRNA mRNA upstream 20004 2650436 ~ 2653371 (+) True CI01000058_02650808_02653235
CI01000058_02635467_02636768.mRNA mRNA upstream 36390 2635176 ~ 2636985 (+) False CI01000058_02635467_02636768
CI01000058_02629861_02631891.mRNA mRNA upstream 41081 2629690 ~ 2632294 (+) True CI01000058_02629861_02631891
CI01000058_02592534_02600835.mRNA mRNA upstream 71620 2591193 ~ 2601755 (+) True CI01000058_02592534_02600835
CI01000058_02578534_02589495.mRNA mRNA upstream 82834 2578061 ~ 2590541 (+) True CI01000058_02578534_02589495
CI01000058_02883775_02884290.mRNA mRNA downstream 208502 2882164 ~ 2885704 (+) True CI01000058_02883775_02884290
CI01000058_02911431_02958568.mRNA mRNA downstream 237769 2911431 ~ 2958568 (+) True CI01000058_02911431_02958568
CI01000058_02964886_02978501.mRNA mRNA downstream 291224 2964886 ~ 2978895 (+) True CI01000058_02964886_02978501
CI01000058_02979997_03027744.mRNA mRNA downstream 306335 2979997 ~ 3028144 (+) True CI01000058_02979997_03027744
CI01000058_03034418_03038200.mRNA mRNA downstream 360756 3034418 ~ 3038344 (+) True CI01000058_03034418_03038200
TU281441 other upstream 875643 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 1216928 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 1385105 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 2076204 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 2217631 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 2020746 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 2020800 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 2020800 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 2020800 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 2152714 4826376 ~ 4849531 (+) True G250094

Expression Profile