RNA id: TU282104


Basic Information

Item Value
RNA id TU282104
length 2116
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G248568
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 3111784 ~ 3114371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCTCTGTCACAACTGAAACTAGCGTCTCGTTCCCATACTGTTTTGCTTACTCAGTAAGCGGCTGCAACTTTTAAAGTTCCACGGCCCATGTTAGCAGTTTACATAGTTAATCTCTTTAGGGTGAGACATGCATCGCTGCAATTACAGTAAAGGGCTGACTGCTAAGCTGCTGGTAACTGCTCTATTTAGGTCAGTTTTGAGGTTAGCACAGTCATGTTTTAACCCTTACTTGCTCTTTTTGACACACCCTGGAAATGATAGTGTTAAATGATAAGTGACTAGTTTAATGCTTTGTGATTTTAGAATGTTTATTTGGCTCGTTCTCGCAAAACTTGACACAGTCTTGGAAGTAAACAGAAGATCAGTATGAACTAATTTCAACATGAGGAAGACAACTAAACCACATTAACCAAAAAAGGAAATGTTTGCATTATTCAGTTGCAATAATTTATTCATAACACTCATAACAATTACTGGTAACAAATTAAATATAAGCATCAGAAATATGAAAAACACAGTTAAATAAATGTTTAAGCTCATAAAATAAAGAAATAAATAAAGTTGACAAAAAGACATAAATATCAGTGTTTACACAATATTTATATTACGCAATATTTACACGATAAGTTATTTCAACAAATTTCAACAACAAATTTTCAAGATAACCCTAGTCAATGTGACTTAAACAACATTTTATGGTTTTAGTTCAATGTAAAACATTGCCATTGTGACATTTTCCAGAACTCCAGAAACAGAAGGTAAAGAGGCTGGCATTGCAGTGCATCAGCAAGTAGTGTGATGGAATGATGATGTGCAAGCGATAAGTTAAAGGATGAAGTCCATTTGTGCCTTATCCTACAGTATGTGGTTGATCTGTCCATTATCCTTTCTTTGTTTTCAGAGTATTCAAACTCGACTCACGTCATCATGGCCAGCCATCATCCAATCCACAGCAACATCCTGTTAGTGCTTTTCTCTCTTTGATGCCAGATACTGTTCGATGTACTTAAAGAGCATATCAAGCTCTCCCATTGCTTTATAAACACCCTTTTCCTTCATCTAAAGAGAAAAAGATATTGTCAGCCTTTGGAATAGTTTTCAAACATAATTTGTTAATTTCAAGCAATTTTAGACTAGAAAATCATTTTGATCATTACTCTTATTAGCATTATATTGCTGTATAAGACTTACCTTTTCATATGAGTTCTTTATGGTGGCAAACTCAAAGGGATTTTTGCAAGAAAAGTATTTCCTCTGTAACATAGAGAGACGTGTGTGTTATTTCATGTAGTTTGCAATGTTAAAGACACCTTCTTTGCCTCACCATACCATTTCACAACAAGAACTAGGTATTTTGACTCACTCGCAACAGCTCTTGCTAATAAAAATCCACAAAGGCTTTCTTCATATGTGCACTATTACGACATCCTGAATATGCCTAAACTACGTTTGTTTTTTTAAAAAAAAAAACTATGTTCACCATCCTAACATTCACCTCAGCTCACATCCTAAATTTATCAACATCATTTTAATGAGGTATTCATGAGCAGAGTTCCATACTTAAAAACAACTTCTGCCTACACTGCCTACACTGATTTTCTGGTCAACCAGAAAGTTTTAAGGGTTGGGGTTGTGGTTGGTTTTAGCTGTGTTTGTCACCAGGATGGACAGATTTACTCTGAATGTGCAAGTAATTATATCAGTGAGATCAAATCTTTTCTCTTAAATCATCCTTTAAACTAATTTCATAAGGACCAAAAGGCGGACTTACGCATTTGACCATATCCCGCTTGAGATCTTGAAATATACTTCCAATGGAATCGATGGGCGTTTTGGGGTGCAAGTGGTTCTTCTGGACAGCTGTTGGCAGAATGGTCTCCAAGTAGAAGCGCAGGATCTCATTCATGACATGGCATCCATAAGGACTCTGTGGATCAGATATATGAGAACGGAGCTCCTTCAGCCTCACAGGAAAGCCCTCCACAAATGAGCAACATTCAGACTTGCAGTCAACTTTTTTGCACTGAGCACTTTCAGAAAGCAGAAGCATGACTAGAGCAGAAAAGATGACTCTAGAGAAAATCATTCTTCAGTTCTCTTTGTTCTTGGCTCTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282150 lncRNA upstream 2535 3109009 ~ 3109249 (+) True G248614
TU282149 lncRNA upstream 3630 3107773 ~ 3108154 (+) True G248613
TU282130 lncRNA upstream 146961 2964493 ~ 2964823 (+) True G248594
TU282102 lncRNA upstream 203587 2891351 ~ 2908197 (+) True G248566
TU282110 lncRNA upstream 232996 2867222 ~ 2878788 (+) True G248574
TU282154 lncRNA downstream 4697 3119068 ~ 3119298 (+) True G248618
TU282094 lncRNA downstream 21927 3136298 ~ 3141022 (+) True G248560
TU282111 lncRNA downstream 35574 3149945 ~ 3150383 (+) True G248575
TU282172 lncRNA downstream 36879 3151250 ~ 3151831 (+) False G248622
TU282173 lncRNA downstream 36909 3151280 ~ 3151831 (+) False G248622
CI01000058_03066079_03101574.mRNA mRNA upstream 10210 3066079 ~ 3101574 (+) True CI01000058_03066079_03101574
CI01000058_03034418_03038200.mRNA mRNA upstream 73440 3034418 ~ 3038344 (+) True CI01000058_03034418_03038200
CI01000058_02979997_03027744.mRNA mRNA upstream 83640 2979997 ~ 3028144 (+) True CI01000058_02979997_03027744
CI01000058_02964886_02978501.mRNA mRNA upstream 132889 2964886 ~ 2978895 (+) True CI01000058_02964886_02978501
CI01000058_02911431_02958568.mRNA mRNA upstream 153216 2911431 ~ 2958568 (+) True CI01000058_02911431_02958568
CI01000058_03169524_03172961.mRNA mRNA downstream 54674 3169045 ~ 3173702 (+) True CI01000058_03169524_03172961
CI01000058_03181624_03193630.mRNA mRNA downstream 67049 3181420 ~ 3195924 (+) True CI01000058_03181624_03193630
CI01000058_03201861_03220295.mRNA mRNA downstream 86611 3200982 ~ 3220724 (+) True CI01000058_03201861_03220295
CI01000058_03503653_03506062.mRNA mRNA downstream 389007 3503378 ~ 3506296 (+) False CI01000058_03503653_03506062
CI01000058_03644271_03645229.mRNA mRNA downstream 529900 3644271 ~ 3645229 (+) True CI01000058_03644271_03645229
TU281441 other upstream 1314052 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 1655337 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 1823514 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 2514613 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 2656040 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 1580037 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 1580091 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 1580091 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 1580091 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 1712005 4826376 ~ 4849531 (+) True G250094

Expression Profile