RNA id: TU283457


Basic Information

Item Value
RNA id TU283457
length 309
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G249767
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4003663 ~ 4003971 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGAATTGGGTCATATAAACTTGCAATTGTGTGTCATAAACTCGCAATTCTGAGAAAGTTTTTTTTCCTCGCAGTTATGACTTTTTTCTCACAAATGCGAGTTTATAGCTTGCAATTCTGACTTCTTTTCTCAGAATTTTGAAACAAACTAAATTCTGAGAAAAAAAGTCACTTTTTCCCCCTCAGAATTGGACTTTTAAATTGTGAGTTTATATCTCGCAATTCTGACTTTGAGATGTAAACTCACAATTGCGAGAAAAAAAGTCAGAATTGTGAGGTGCAATTATCTTTTCTTTTTATTATTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283372 lncRNA upstream 228352 3774623 ~ 3775311 (+) True G249692
TU283349 lncRNA upstream 251583 3744045 ~ 3752080 (+) True G249675
TU283347 lncRNA upstream 260579 3742660 ~ 3743084 (+) True G249674
TU283342 lncRNA upstream 271479 3721277 ~ 3732184 (+) True G249669
TU283336 lncRNA upstream 293584 3706832 ~ 3710079 (+) True G249664
TU283459 lncRNA downstream 2087 4006058 ~ 4006271 (+) True G249769
TU283460 lncRNA downstream 3344 4007315 ~ 4007534 (+) True G249770
TU283461 lncRNA downstream 6983 4010954 ~ 4011153 (+) True G249771
TU283463 lncRNA downstream 14526 4018497 ~ 4018753 (+) True G249773
TU283464 lncRNA downstream 15498 4019469 ~ 4019693 (+) True G249774
CI01000058_03959155_03965275.mRNA mRNA upstream 38065 3959155 ~ 3965598 (+) True CI01000058_03959155_03965275
CI01000058_03915537_03946197.mRNA mRNA upstream 55590 3914922 ~ 3948073 (+) True CI01000058_03915537_03946197
CI01000058_03889526_03896649.mRNA mRNA upstream 106908 3889314 ~ 3896755 (+) True CI01000058_03889526_03896649
CI01000058_03846867_03850723.mRNA mRNA upstream 152940 3846867 ~ 3850723 (+) True CI01000058_03846867_03850723
CI01000058_03645458_03659734.mRNA mRNA upstream 343901 3645458 ~ 3659762 (+) True CI01000058_03645458_03659734
CI01000058_04174884_04175951.mRNA mRNA downstream 170829 4174800 ~ 4176830 (+) True CI01000058_04174884_04175951
CI01000058_04263520_04265153.mRNA mRNA downstream 259153 4263124 ~ 4265628 (+) True CI01000058_04263520_04265153
CI01000058_04272001_04275349.mRNA mRNA downstream 267935 4271906 ~ 4275431 (+) True CI01000058_04272001_04275349
CI01000058_04303891_04308850.mRNA mRNA downstream 299833 4303804 ~ 4308997 (+) True CI01000058_04303891_04308850
CI01000058_04344622_04358133.mRNA mRNA downstream 339050 4343021 ~ 4358133 (+) True CI01000058_04344622_04358133
TU281441 other upstream 2205931 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 2547216 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 2715393 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 3406492 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 3547919 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 690437 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 690491 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 690491 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 690491 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 822405 4826376 ~ 4849531 (+) True G250094

Expression Profile