RNA id: TU283461


Basic Information

Item Value
RNA id TU283461
length 200
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G249771
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4010954 ~ 4011153 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGAGATCCTGTGTCGGCCGCAAACACACACGCTTGCACACAAATAAAAACAACTCTTCAATTCGAACAAAACCCACACACACACACACACATACACTTCTGTCTCAAGATAATACTGTCTTTAATAAATGTCCCATAAATATTCTTAGAAGTAAAAAAAAAAAAATCTGCTATTTGATTCATTTTTGTTTGTGTATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283460 lncRNA upstream 3420 4007315 ~ 4007534 (+) True G249770
TU283459 lncRNA upstream 4683 4006058 ~ 4006271 (+) True G249769
TU283457 lncRNA upstream 6983 4003663 ~ 4003971 (+) True G249767
TU283372 lncRNA upstream 235643 3774623 ~ 3775311 (+) True G249692
TU283349 lncRNA upstream 258874 3744045 ~ 3752080 (+) True G249675
TU283463 lncRNA downstream 7344 4018497 ~ 4018753 (+) True G249773
TU283464 lncRNA downstream 8316 4019469 ~ 4019693 (+) True G249774
TU283466 lncRNA downstream 13547 4024700 ~ 4054447 (+) True G249776
TU283531 lncRNA downstream 104499 4115652 ~ 4116392 (+) True G249839
TU283567 lncRNA downstream 143094 4154247 ~ 4154491 (+) True G249869
CI01000058_03959155_03965275.mRNA mRNA upstream 45356 3959155 ~ 3965598 (+) True CI01000058_03959155_03965275
CI01000058_03915537_03946197.mRNA mRNA upstream 62881 3914922 ~ 3948073 (+) True CI01000058_03915537_03946197
CI01000058_03889526_03896649.mRNA mRNA upstream 114199 3889314 ~ 3896755 (+) True CI01000058_03889526_03896649
CI01000058_03846867_03850723.mRNA mRNA upstream 160231 3846867 ~ 3850723 (+) True CI01000058_03846867_03850723
CI01000058_03645458_03659734.mRNA mRNA upstream 351192 3645458 ~ 3659762 (+) True CI01000058_03645458_03659734
CI01000058_04174884_04175951.mRNA mRNA downstream 163647 4174800 ~ 4176830 (+) True CI01000058_04174884_04175951
CI01000058_04263520_04265153.mRNA mRNA downstream 251971 4263124 ~ 4265628 (+) True CI01000058_04263520_04265153
CI01000058_04272001_04275349.mRNA mRNA downstream 260753 4271906 ~ 4275431 (+) True CI01000058_04272001_04275349
CI01000058_04303891_04308850.mRNA mRNA downstream 292651 4303804 ~ 4308997 (+) True CI01000058_04303891_04308850
CI01000058_04344622_04358133.mRNA mRNA downstream 331868 4343021 ~ 4358133 (+) True CI01000058_04344622_04358133
TU281441 other upstream 2213222 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 2554507 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 2722684 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 3413783 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 3555210 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 683255 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 683309 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 683309 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 683309 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 815223 4826376 ~ 4849531 (+) True G250094

Expression Profile