RNA id: TU283571


Basic Information

Item Value
RNA id TU283571
length 503
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G249873
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4170590 ~ 4171092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTATTTCAGTAAAATGTCATACAATAAGTAAGTGGATACAGACATAGAAAAGATAAACTACTTTGTTATTGTCTACAGTTTTCAACCTTCAGTGATCACAAAATGAACAATCTCGCTGATAACATATTATGCAGTGACTTTAGAGTGTATTTTCCCCCTATTATTATCATACAGTGAGTGTTGTTGTTGCTAAATAAATCTAAAAATGAAAACTATTTCATTATATTTCCGCTGAGTGAGCTGTATAGCATTTTATATATTTCCGCTGAGTGAGCTGTACAGTCCGCCATGTTTATCTCCTCACCAGGGCATTTAACAGCAGCTTTCAAGTAAGAAATGTATTCTTATTAAAGCTACTAAAGTTATTTAATCAAGAGCAGTGAATGATTTTCTGTTTTTCTTTTGTTGTTTGGTTCATATTAACAGCATATACAGCAGTAGGTACTGTATATTACGCTGCTGTCACTTTAATACACAGATCTAATATACATATGCAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283567 lncRNA upstream 16099 4154247 ~ 4154491 (+) True G249869
TU283531 lncRNA upstream 54198 4115652 ~ 4116392 (+) True G249839
TU283466 lncRNA upstream 116143 4024700 ~ 4054447 (+) True G249776
TU283464 lncRNA upstream 150897 4019469 ~ 4019693 (+) True G249774
TU283463 lncRNA upstream 151837 4018497 ~ 4018753 (+) True G249773
TU283584 lncRNA downstream 46836 4217928 ~ 4218769 (+) True G249886
TU283597 lncRNA downstream 69145 4240237 ~ 4240895 (+) True G249899
TU283668 lncRNA downstream 169680 4340772 ~ 4340984 (+) True G249970
TU283682 lncRNA downstream 192615 4363707 ~ 4413637 (+) True G249981
TU283681 lncRNA downstream 246833 4417925 ~ 4418264 (+) True G249980
CI01000058_03959155_03965275.mRNA mRNA upstream 204992 3959155 ~ 3965598 (+) True CI01000058_03959155_03965275
CI01000058_03915537_03946197.mRNA mRNA upstream 222517 3914922 ~ 3948073 (+) True CI01000058_03915537_03946197
CI01000058_03889526_03896649.mRNA mRNA upstream 273835 3889314 ~ 3896755 (+) True CI01000058_03889526_03896649
CI01000058_03846867_03850723.mRNA mRNA upstream 319867 3846867 ~ 3850723 (+) True CI01000058_03846867_03850723
CI01000058_03645458_03659734.mRNA mRNA upstream 510828 3645458 ~ 3659762 (+) True CI01000058_03645458_03659734
CI01000058_04174884_04175951.mRNA mRNA downstream 3708 4174800 ~ 4176830 (+) True CI01000058_04174884_04175951
CI01000058_04263520_04265153.mRNA mRNA downstream 92032 4263124 ~ 4265628 (+) True CI01000058_04263520_04265153
CI01000058_04272001_04275349.mRNA mRNA downstream 100814 4271906 ~ 4275431 (+) True CI01000058_04272001_04275349
CI01000058_04303891_04308850.mRNA mRNA downstream 132712 4303804 ~ 4308997 (+) True CI01000058_04303891_04308850
CI01000058_04344622_04358133.mRNA mRNA downstream 171929 4343021 ~ 4358133 (+) True CI01000058_04344622_04358133
TU281441 other upstream 2372858 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 2714143 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 2882320 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 3573419 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 3714846 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 523316 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 523370 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 523370 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 523370 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 655284 4826376 ~ 4849531 (+) True G250094

Expression Profile