RNA id: TU283584



Basic Information


Item Value
RNA id TU283584
length 819
lncRNA type intronic
GC content 0.39
exon number 2
gene id G249886
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4217928 ~ 4218769 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTATCTATATCTTTATATATATATTTACACACACACACAAGTCAATTATCCAGAAAACCAGCTGAGCCAACAGCGCGTTTCCTGCAATGAGAAATGTGTTTTAATAGGCCAAACATGCTGTAATTTTTACACGAGTATACGTGTGTATATATATGTCTTTTATAGGAATGAAGAGACATATATCATGTTTTTACCCTTTAGATCTTTCTTCGGACTCTACTCTAATTGGTAGGCCAGTGAGTGTTGATGAAAAGGAATGTTGTGTGTGTGTTTGTGTGCTTCTTTGTGTGTGGTGGGATTTGATGCCTGACATTAAGGCCAGCAATTAAAGGTGAGATGTGAGCACAGGGAATACTTAAAACATCCCAGACACATTTCATAGACATTAGAGAATGCCTGTGGTGTGTACCAGCATGAACCACTGAACTTGGATTACTCCAATGACAATTAAAGTGGTTTTAACATAAAAGTTTTTATCTTTTTATCCTTAGGCCAACATATAGTGTTAGTCAAGGTATTTTGCACCAAAAAACAGCGAGTGCCAGGCTCTGACTGAATGCTCTGAAAACAGGCAAAGCAGGATTTTGAAGCTCTGAGCTTCTGGAAGGCTTTTGGATTTGTGCGCAAAACTCTTGGAGTAATTCTCCCAAGCTGTAACTTTTAAGATGCTGGTATTCAGTGTTTTCTCCCATTTCACACACACACACACACACACACACACACACACACACACCAGTCTCTCTATTCCTCTTAGTCTGTTTCTCTGGATTTCTTTCATTCTCTTGTGCTGTCTCTGGACTGTAGAGGCAGCGGTTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU283571 lncRNA upstream 46836 4170590 ~ 4171092 (+) True G249873
TU283567 lncRNA upstream 63437 4154247 ~ 4154491 (+) True G249869
TU283531 lncRNA upstream 101536 4115652 ~ 4116392 (+) True G249839
TU283466 lncRNA upstream 163481 4024700 ~ 4054447 (+) True G249776
TU283464 lncRNA upstream 198235 4019469 ~ 4019693 (+) True G249774
TU283597 lncRNA downstream 21468 4240237 ~ 4240895 (+) True G249899
TU283668 lncRNA downstream 122003 4340772 ~ 4340984 (+) True G249970
TU283682 lncRNA downstream 144938 4363707 ~ 4413637 (+) True G249981
TU283681 lncRNA downstream 199156 4417925 ~ 4418264 (+) True G249980
TU283680 lncRNA downstream 201579 4420348 ~ 4420792 (+) True G249979
CI01000058_04174884_04175951.mRNA mRNA upstream 41098 4174800 ~ 4176830 (+) True CI01000058_04174884_04175951
CI01000058_03959155_03965275.mRNA mRNA upstream 252330 3959155 ~ 3965598 (+) True CI01000058_03959155_03965275
CI01000058_03915537_03946197.mRNA mRNA upstream 269855 3914922 ~ 3948073 (+) True CI01000058_03915537_03946197
CI01000058_03889526_03896649.mRNA mRNA upstream 321173 3889314 ~ 3896755 (+) True CI01000058_03889526_03896649
CI01000058_03846867_03850723.mRNA mRNA upstream 367205 3846867 ~ 3850723 (+) True CI01000058_03846867_03850723
CI01000058_04263520_04265153.mRNA mRNA downstream 44355 4263124 ~ 4265628 (+) True CI01000058_04263520_04265153
CI01000058_04272001_04275349.mRNA mRNA downstream 53137 4271906 ~ 4275431 (+) True CI01000058_04272001_04275349
CI01000058_04303891_04308850.mRNA mRNA downstream 85035 4303804 ~ 4308997 (+) True CI01000058_04303891_04308850
CI01000058_04344622_04358133.mRNA mRNA downstream 124252 4343021 ~ 4358133 (+) True CI01000058_04344622_04358133
CI01000058_04360496_04365634.mRNA mRNA downstream 141727 4360496 ~ 4366118 (+) True CI01000058_04360496_04365634
TU281441 other upstream 2420196 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 2761481 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 2929658 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 3620757 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 3762184 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 475639 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 475693 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 475693 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 475693 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 607607 4826376 ~ 4849531 (+) True G250094

Expression Profile