RNA id: TU283668


Basic Information

Item Value
RNA id TU283668
length 213
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G249970
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4340772 ~ 4340984 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGGACTGTGGAAACTAGGACTTTTCTTTTTCTTAGTTTCTGAATGTATTGTCAAACAGCATATATAGGCTATGAGTGTTGGAGGGTTTTTATTTTGGAATTCAGCAGCAGACAGTGTGAGACTGTGAGGTGTACTATCATTTTCAGGTGAAATTGGGCTGTGAAATATTATTTATATTTATTTATTTAGGCCTGTTTTTTTTTTTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283597 lncRNA upstream 99877 4240237 ~ 4240895 (+) True G249899
TU283584 lncRNA upstream 122003 4217928 ~ 4218769 (+) True G249886
TU283571 lncRNA upstream 169680 4170590 ~ 4171092 (+) True G249873
TU283567 lncRNA upstream 186281 4154247 ~ 4154491 (+) True G249869
TU283531 lncRNA upstream 224380 4115652 ~ 4116392 (+) True G249839
TU283682 lncRNA downstream 22723 4363707 ~ 4413637 (+) True G249981
TU283681 lncRNA downstream 76941 4417925 ~ 4418264 (+) True G249980
TU283680 lncRNA downstream 79364 4420348 ~ 4420792 (+) True G249979
TU283723 lncRNA downstream 110543 4451527 ~ 4452571 (+) True G250013
TU283764 lncRNA downstream 201015 4541999 ~ 4542243 (+) True G250035
CI01000058_04303891_04308850.mRNA mRNA upstream 31775 4303804 ~ 4308997 (+) True CI01000058_04303891_04308850
CI01000058_04272001_04275349.mRNA mRNA upstream 65341 4271906 ~ 4275431 (+) True CI01000058_04272001_04275349
CI01000058_04263520_04265153.mRNA mRNA upstream 75144 4263124 ~ 4265628 (+) True CI01000058_04263520_04265153
CI01000058_04174884_04175951.mRNA mRNA upstream 163942 4174800 ~ 4176830 (+) True CI01000058_04174884_04175951
CI01000058_03959155_03965275.mRNA mRNA upstream 375174 3959155 ~ 3965598 (+) True CI01000058_03959155_03965275
CI01000058_04344622_04358133.mRNA mRNA downstream 2037 4343021 ~ 4358133 (+) True CI01000058_04344622_04358133
CI01000058_04360496_04365634.mRNA mRNA downstream 19512 4360496 ~ 4366118 (+) True CI01000058_04360496_04365634
CI01000058_04405407_04408449.mRNA mRNA downstream 64423 4405407 ~ 4409395 (+) True CI01000058_04405407_04408449
CI01000058_04466648_04523385.mRNA mRNA downstream 125212 4466196 ~ 4523483 (+) True CI01000058_04466648_04523385
CI01000058_04556260_04565696.mRNA mRNA downstream 215173 4556157 ~ 4566008 (+) True CI01000058_04556260_04565696
TU281441 other upstream 2543040 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 2884325 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 3052502 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 3743601 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 3885028 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 353424 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 353478 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 353478 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 353478 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 485392 4826376 ~ 4849531 (+) True G250094

Expression Profile