RNA id: TU283682



Basic Information


Item Value
RNA id TU283682
length 1953
lncRNA type read_through
GC content 0.36
exon number 2
gene id G249981
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4363707 ~ 4413637 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCACGTTTAAATAGAACTTTTATTTACAACAATATCAACATCAAGCAAAATAATTAAGTGTAATGTAATTTACATCCTGTAAAATGTGAGCTTATCTTCCATGTTCACACCTTTACGTCAACCAGTTCTGAAAACACACCAGAATAACCTCAATTTCCCGGAATTATCATTTCAAAATATACTTTGTCGCAATCAACAGTAATCTAGCGAAATGAACACAAATTATAGTGTTGCTTTCCTGAAGAGACTGACTGACTTATTAGTTTCCCCATTGTATTTCATTCCTGCACATGGGAATCAGCATTATTTGAAGTCACTGATGGTAAAGACTTGATTAATGAAGCGGCTGAGGATCACTGCAATACAGAGATGCACGGATGAGCGTCTTTGTCAGAATGGATTCCTTATTACTCGTACTTTTAAAAAGCACATCCGAGAGGCTCTTAAAAGTGGTTTAAGAAACGTTTTAAAATGAGGTGTGTAGTCACAATTTATCTTGGCAGTTCTGTAGATAATTCATAATTATTAAAATCTTACAAAACTTAAACTGAAGAGCGAACAAACCGCATGATAGAGAAACCCTCCAAAAGCACAGACAATACTGCTAAAATATTAACTGGCCTTAAAAATAAACAGGTATACTTGGTTTTGTATGTATACAGTATATAGTACAAAATCATAATATGTAGTAATATGTTCATATGATATGTACCTTTTACTCTGCGCATTTGCGCAAAAACATATATAAATGGATACATTTCTGTAATCAAACTTGAGAAAACAGAAAAAGAAAAAACTGAAAAAATATCTTTGGATTGTGCATGTTTCTTAAAGGTAGATTTCCGAAGAACCGACAGTACGATACAGTGAGAAAGTGAGTTATTTTCCTTAATAAGAGCTAGCTTAAAGAGCAACATCAAGCGTAATCTGAAAACTTGCACCATTTTTTTTTTTTCTGGTCAGAACGAAAAAAGGAAATGAAAATAAAATGATGAAACCGTCACTGCATAACATGTCTGCGATTAAAAAAAGTGCCATCCAAACATAATGGCGGTCATTGTTGGAAAAAAAGAAAAAGAGGCTGTGCTGGAACAGATAAAAATAAAATATTTTCTCCCTTTGATAAAAGTTAGAATAGATGTAAAACCCAGAGCAGTATTGACCTAAAATATAGATAAGATGGACCTAACCGGGCCCAAACTCTGTGCAAAAAAAGTATGTAGTAAAAGCATGTATGATACATATGTAGCATACAGTATTTACAATTCCAATCTTATTCACACAAAAATAAAAGAAAAAAATCCTGTCTAATACTGCAGTACCATTTGCTTTTTGTTGACACACCACTTCGGTGGATTGAGAGGAGGATTATTGCTTTGATATGCGTAAGTGATGAAGTTCTGGTGCTTACAATTCCCACGGTTTTTAATTAAAACAAGGCTTGTCCGAAACAAATTCAAAATAGACAATATGCACATAATCGTTCTATAAGGCTAGAAAAGCAAGAAATATATTGCAACTATCCTTTTCCGTACTAGCCTTAAAATAAAGTGCTCCCCACACTGTCAAGTTGTACCACAACCGTTCCTACTCTGTTCCCCCTGGTGGTTATGTTGTGTACTGCAGTACAGCCACGTGGGACAGGAGAGAGAGCCTGCTGCACTTGCTACTGGGCATACTCCGAAAAACCCCCACAGAGAAGGCTCGAGTCTCTCTCTTTCTCTCTTTTTCCCTTTCGATGTCTTTTTCTCTCTCTCAGTCAAGTTTTCACTGAAGAGTTCCAGTGATTTCTCCTCTACGAGGCGTATTTTATAGCTTCATGTTGACATTTCCTCACTGGACTGATGTGCGAGTCCGAGTTAGACTCCAGCTTTGACAGAGATGGCTCATCGCCTCAGCAGTACTTCTGTAAAACACATTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU283668 lncRNA upstream 22723 4340772 ~ 4340984 (+) True G249970
TU283597 lncRNA upstream 122812 4240237 ~ 4240895 (+) True G249899
TU283584 lncRNA upstream 144938 4217928 ~ 4218769 (+) True G249886
TU283571 lncRNA upstream 192615 4170590 ~ 4171092 (+) True G249873
TU283567 lncRNA upstream 209216 4154247 ~ 4154491 (+) True G249869
TU283681 lncRNA downstream 4288 4417925 ~ 4418264 (+) True G249980
TU283680 lncRNA downstream 6711 4420348 ~ 4420792 (+) True G249979
TU283723 lncRNA downstream 37890 4451527 ~ 4452571 (+) True G250013
TU283764 lncRNA downstream 128362 4541999 ~ 4542243 (+) True G250035
TU283786 lncRNA downstream 263276 4676913 ~ 4677151 (+) True G250049
CI01000058_04344622_04358133.mRNA mRNA upstream 5574 4343021 ~ 4358133 (+) True CI01000058_04344622_04358133
CI01000058_04303891_04308850.mRNA mRNA upstream 54710 4303804 ~ 4308997 (+) True CI01000058_04303891_04308850
CI01000058_04272001_04275349.mRNA mRNA upstream 88276 4271906 ~ 4275431 (+) True CI01000058_04272001_04275349
CI01000058_04263520_04265153.mRNA mRNA upstream 98079 4263124 ~ 4265628 (+) True CI01000058_04263520_04265153
CI01000058_04174884_04175951.mRNA mRNA upstream 186877 4174800 ~ 4176830 (+) True CI01000058_04174884_04175951
CI01000058_04466648_04523385.mRNA mRNA downstream 52559 4466196 ~ 4523483 (+) True CI01000058_04466648_04523385
CI01000058_04556260_04565696.mRNA mRNA downstream 142520 4556157 ~ 4566008 (+) True CI01000058_04556260_04565696
CI01000058_04584028_04613429.mRNA mRNA downstream 170391 4584028 ~ 4613747 (+) True CI01000058_04584028_04613429
CI01000058_04637318_04650366.mRNA mRNA downstream 223581 4637218 ~ 4650506 (+) True CI01000058_04637318_04650366
CI01000058_04656762_04675421.mRNA mRNA downstream 242679 4656316 ~ 4676097 (+) True CI01000058_04656762_04675421
TU281441 other upstream 2565975 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 2907260 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 3075437 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 3766536 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 3907963 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 280771 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 280825 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 280825 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 280825 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 412739 4826376 ~ 4849531 (+) True G250094

Expression Profile