RNA id: TU283786


Basic Information

Item Value
RNA id TU283786
length 239
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G250049
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4676913 ~ 4677151 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGCCGTATACCAGAGGACTTCATGCTTCCTTCTGCTGACAAGCTTTATGGAGAAGCTGATTTCATTTTCCAGCAGGATTTGGCACCTGCCCACACTGACAAAGGTACCAAAAGCTGGTTCAATGACCATGGTGTTACTGTGCTTGATTGGCCAGCAAACTCGCCTGACCTGAACCCCATAGAGAATCTATGAGAGGAAGATGAGAGACACCAGACCCAACAATGCAGATGAGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283764 lncRNA upstream 134670 4541999 ~ 4542243 (+) True G250035
TU283723 lncRNA upstream 224342 4451527 ~ 4452571 (+) True G250013
TU283680 lncRNA upstream 256121 4420348 ~ 4420792 (+) True G249979
TU283681 lncRNA upstream 258649 4417925 ~ 4418264 (+) True G249980
TU283682 lncRNA upstream 263276 4363707 ~ 4413637 (+) True G249981
TU283776 lncRNA downstream 9484 4686635 ~ 4689520 (+) True CI01000058_04678629_04687645
TU283812 lncRNA downstream 50658 4727809 ~ 4738445 (+) True G250075
TU283841 lncRNA downstream 206854 4884005 ~ 4884279 (+) True G250098
TU283838 lncRNA downstream 207311 4884462 ~ 4885100 (+) True G250095
TU283863 lncRNA downstream 227789 4904940 ~ 4905140 (+) True G250120
CI01000058_04656762_04675421.mRNA mRNA upstream 816 4656316 ~ 4676097 (+) True CI01000058_04656762_04675421
CI01000058_04637318_04650366.mRNA mRNA upstream 26407 4637218 ~ 4650506 (+) True CI01000058_04637318_04650366
CI01000058_04584028_04613429.mRNA mRNA upstream 63166 4584028 ~ 4613747 (+) True CI01000058_04584028_04613429
CI01000058_04556260_04565696.mRNA mRNA upstream 110905 4556157 ~ 4566008 (+) True CI01000058_04556260_04565696
CI01000058_04466648_04523385.mRNA mRNA upstream 153430 4466196 ~ 4523483 (+) True CI01000058_04466648_04523385
CI01000058_04678629_04687645.mRNA mRNA downstream 951 4678102 ~ 4688495 (+) False CI01000058_04678629_04687645
CI01000058_04748480_04757498.mRNA mRNA downstream 71273 4748424 ~ 4757638 (+) True CI01000058_04748480_04757498
CI01000058_04769469_04774262.mRNA mRNA downstream 92318 4769469 ~ 4774485 (+) True CI01000058_04769469_04774262
CI01000058_04777182_04780095.mRNA mRNA downstream 99391 4776542 ~ 4780376 (+) True CI01000058_04777182_04780095
CI01000058_04782847_04791049.mRNA mRNA downstream 105696 4782847 ~ 4791555 (+) True CI01000058_04782847_04791049
TU281441 other upstream 2879181 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 3220466 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 3388643 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 4079742 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 4221169 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 17257 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 17311 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 17311 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 17311 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 149225 4826376 ~ 4849531 (+) True G250094

Expression Profile