RNA id: TU283771


Basic Information

Item Value
RNA id TU283771
length 625
RNA type TUCP
GC content 0.42
exon number 3
gene id G250039
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4694408 ~ 4697161 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAGGCACGCTGAGCTGGTAACAAGGGTATAAAAGAGCCAGGACGAAAAGACAAAGTACACAACTTGTCCAGAAACCAGACCGCAACCATACAGAATGTCTCAGCCAGAGGTCAAGAAGAAGAAGCGGCCAGTTGTAAAAGAGGAGGATCTGAAAGGAGCCCGCAGTAAACTGGGGCTGAAAGGAGAGGTCAAGAGCAAGACATATGAGGTCATGGTTGAGTGTGAGCGCATGGGGAAGGTGGCGCCGTCTGTTTTCAGTGGAGTTCGGTCTGGAGGAGAGACGGTGCTTGAGAAACCCAAACCTCCAACAGGAAGCGTGTTTGGCAAATGATGAATCAAGTGCTGAATGGACAAATGCCCTGATAGCGCATAGATTTCGTTTTTAGCATCCACATCATGAATTAATCAACCATAATGTGGATATTTATGTTGCATATTTCCAACTAATAGTGTATGTTTTTATACTGTTTTATGTTGCTATATGTTTCTCTCAAATTGCACTTGAAAAATTGTATGTGCTAGTTTCTAGTATCATGTTTTCTATATAAAACATTTCTTAAATGTATCACTGAGTCGCCGAGTATGATTTCTCTGTCATGCCGTTTATGACCTGTCATTTCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283776 lncRNA upstream 4942 4686635 ~ 4689520 (+) True CI01000058_04678629_04687645
TU283786 lncRNA upstream 17311 4676913 ~ 4677151 (+) True G250049
TU283764 lncRNA upstream 152219 4541999 ~ 4542243 (+) True G250035
TU283723 lncRNA upstream 241891 4451527 ~ 4452571 (+) True G250013
TU283680 lncRNA upstream 273670 4420348 ~ 4420792 (+) True G249979
TU283812 lncRNA downstream 30777 4727809 ~ 4738445 (+) True G250075
TU283841 lncRNA downstream 186973 4884005 ~ 4884279 (+) True G250098
TU283838 lncRNA downstream 187430 4884462 ~ 4885100 (+) True G250095
TU283863 lncRNA downstream 207908 4904940 ~ 4905140 (+) True G250120
TU283867 lncRNA downstream 221340 4918372 ~ 4918573 (+) True G250124
CI01000058_04678629_04687645.mRNA mRNA upstream 5967 4678102 ~ 4688495 (+) False CI01000058_04678629_04687645
CI01000058_04656762_04675421.mRNA mRNA upstream 18365 4656316 ~ 4676097 (+) True CI01000058_04656762_04675421
CI01000058_04637318_04650366.mRNA mRNA upstream 43956 4637218 ~ 4650506 (+) True CI01000058_04637318_04650366
CI01000058_04584028_04613429.mRNA mRNA upstream 80715 4584028 ~ 4613747 (+) True CI01000058_04584028_04613429
CI01000058_04556260_04565696.mRNA mRNA upstream 128454 4556157 ~ 4566008 (+) True CI01000058_04556260_04565696
CI01000058_04748480_04757498.mRNA mRNA downstream 51392 4748424 ~ 4757638 (+) True CI01000058_04748480_04757498
CI01000058_04769469_04774262.mRNA mRNA downstream 72437 4769469 ~ 4774485 (+) True CI01000058_04769469_04774262
CI01000058_04777182_04780095.mRNA mRNA downstream 79510 4776542 ~ 4780376 (+) True CI01000058_04777182_04780095
CI01000058_04782847_04791049.mRNA mRNA downstream 85815 4782847 ~ 4791555 (+) True CI01000058_04782847_04791049
CI01000058_04792565_04803181.mRNA mRNA downstream 95533 4792565 ~ 4803404 (+) True CI01000058_04792565_04803181
TU281441 other upstream 2896730 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 3238015 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 3406192 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 4097291 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 4238718 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283837 other downstream 129344 4826376 ~ 4849531 (+) True G250094

Expression Profile