RNA id: TU283812


Basic Information

Item Value
RNA id TU283812
length 384
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G250075
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4727809 ~ 4738445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGGGTCTCATGAAGCTTTATTAGGTTTAAGTGAACCTGGAAAAGAAAGTAAGGTCACTAAATTTTCTTTCAGCATCTAAACCACTTTGAAGCAACTCTGCACTCATTCATCTCACGTTAACATTGTCTGTGAGACCCATACGGTGACGGAGCAGGAGATCCAGCAAACACTGGATCTTGAGGATGCTAGGGCATGAAGGGGTATTTTACACCAGGAGGAACAAAAGACTTGAAGGGTTGAGGCCCATAGTACATTTGGTACATTGGAGGATAACCTGCAAACTGCTCAAACTGGGCAGCAGTGGTTGTGGAAGGTGTAGTTGTTGCAGGAGTAGTTGATTCAACTGGGCTCTTGAAGTGGTACATATAGGGAGGAAANNNNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283776 lncRNA upstream 38289 4686635 ~ 4689520 (+) True CI01000058_04678629_04687645
TU283786 lncRNA upstream 50658 4676913 ~ 4677151 (+) True G250049
TU283764 lncRNA upstream 185566 4541999 ~ 4542243 (+) True G250035
TU283723 lncRNA upstream 275238 4451527 ~ 4452571 (+) True G250013
TU283680 lncRNA upstream 307017 4420348 ~ 4420792 (+) True G249979
TU283841 lncRNA downstream 145560 4884005 ~ 4884279 (+) True G250098
TU283838 lncRNA downstream 146017 4884462 ~ 4885100 (+) True G250095
TU283863 lncRNA downstream 166495 4904940 ~ 4905140 (+) True G250120
TU283867 lncRNA downstream 179927 4918372 ~ 4918573 (+) True G250124
TU283931 lncRNA downstream 346195 5084640 ~ 5137852 (+) True G250187
CI01000058_04678629_04687645.mRNA mRNA upstream 39314 4678102 ~ 4688495 (+) False CI01000058_04678629_04687645
CI01000058_04656762_04675421.mRNA mRNA upstream 51712 4656316 ~ 4676097 (+) True CI01000058_04656762_04675421
CI01000058_04637318_04650366.mRNA mRNA upstream 77303 4637218 ~ 4650506 (+) True CI01000058_04637318_04650366
CI01000058_04584028_04613429.mRNA mRNA upstream 114062 4584028 ~ 4613747 (+) True CI01000058_04584028_04613429
CI01000058_04556260_04565696.mRNA mRNA upstream 161801 4556157 ~ 4566008 (+) True CI01000058_04556260_04565696
CI01000058_04748480_04757498.mRNA mRNA downstream 9979 4748424 ~ 4757638 (+) True CI01000058_04748480_04757498
CI01000058_04769469_04774262.mRNA mRNA downstream 31024 4769469 ~ 4774485 (+) True CI01000058_04769469_04774262
CI01000058_04777182_04780095.mRNA mRNA downstream 38097 4776542 ~ 4780376 (+) True CI01000058_04777182_04780095
CI01000058_04782847_04791049.mRNA mRNA downstream 44402 4782847 ~ 4791555 (+) True CI01000058_04782847_04791049
CI01000058_04792565_04803181.mRNA mRNA downstream 54120 4792565 ~ 4803404 (+) True CI01000058_04792565_04803181
TU283770 other upstream 30648 4694462 ~ 4697161 (+) False G250039
TU283771 other upstream 30777 4694462 ~ 4697032 (+) True G250039
TU283772 other upstream 30899 4694408 ~ 4696910 (+) False G250039
TU283769 other upstream 30899 4694462 ~ 4696910 (+) False G250039
TU281441 other upstream 2930077 1795713 ~ 1795757 (+) True G247958
TU283837 other downstream 87931 4826376 ~ 4849531 (+) True G250094

Expression Profile