RNA id: TU283841


Basic Information

Item Value
RNA id TU283841
length 275
lncRNA type intronic
GC content 0.37
exon number 1
gene id G250098
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 4884005 ~ 4884279 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGTGACGAGAATACATTTTGTGCACAAAAACAAAACAAAAATAACTTTATTTAACAATATCTTCTCTTTTATGTCATTTTCCTACACTGTTAGGTTCTACATCTGAATGCCGACTCATTATTGGCCGACTCCTGCGTCAGTGTCACACGTTATGCTGTTCACGTGAACAACGTCGGACAATACTGAGTCTTCAATCTGACTTAGAACCTGGAAGCGCGGAACGTAAACAGCATATTGTTGAATAAAGTCATTATTTTTGTTTTGTTTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283812 lncRNA upstream 145560 4727809 ~ 4738445 (+) True G250075
TU283776 lncRNA upstream 194485 4686635 ~ 4689520 (+) True CI01000058_04678629_04687645
TU283786 lncRNA upstream 206854 4676913 ~ 4677151 (+) True G250049
TU283764 lncRNA upstream 341762 4541999 ~ 4542243 (+) True G250035
TU283723 lncRNA upstream 431434 4451527 ~ 4452571 (+) True G250013
TU283838 lncRNA downstream 183 4884462 ~ 4885100 (+) True G250095
TU283863 lncRNA downstream 20661 4904940 ~ 4905140 (+) True G250120
TU283867 lncRNA downstream 34093 4918372 ~ 4918573 (+) True G250124
TU283931 lncRNA downstream 200361 5084640 ~ 5137852 (+) True G250187
TU283965 lncRNA downstream 296622 5180901 ~ 5181105 (+) True G250219
CI01000058_04806751_04821030.mRNA mRNA upstream 62310 4806751 ~ 4821695 (+) True CI01000058_04806751_04821030
CI01000058_04792565_04803181.mRNA mRNA upstream 80601 4792565 ~ 4803404 (+) True CI01000058_04792565_04803181
CI01000058_04782847_04791049.mRNA mRNA upstream 92450 4782847 ~ 4791555 (+) True CI01000058_04782847_04791049
CI01000058_04777182_04780095.mRNA mRNA upstream 103629 4776542 ~ 4780376 (+) True CI01000058_04777182_04780095
CI01000058_04769469_04774262.mRNA mRNA upstream 109520 4769469 ~ 4774485 (+) True CI01000058_04769469_04774262
CI01000058_04923557_04926609.mRNA mRNA downstream 39011 4923290 ~ 4927654 (+) True CI01000058_04923557_04926609
CI01000058_05091135_05091372.mRNA mRNA downstream 206856 5091135 ~ 5092015 (+) True CI01000058_05091135_05091372
TU283837 other upstream 168 4826376 ~ 4849531 (+) True G250094
TU283770 other upstream 186844 4694462 ~ 4697161 (+) False G250039
TU283771 other upstream 186973 4694462 ~ 4697032 (+) True G250039
TU283772 other upstream 187095 4694408 ~ 4696910 (+) False G250039
TU283769 other upstream 187095 4694462 ~ 4696910 (+) False G250039

Expression Profile