RNA id: TU307316


Basic Information

Item Value
RNA id TU307316
length 283
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G270803
representative True

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1008046 ~ 1008810 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCATTTGCTGGGTTAAAACAACAACTTCATTGGGTTAGAACAACCCATTCGCTGGGTTAAAACAACCCATTTGCTTTGGTTAAAACAACCCATTCACTGGGTTAAAACAACCCATTTGCTGGGTTAAAACAACCCAACCGCTGGGTTAAAACAACCCATTTGCTGGGTTAAAACAACCCATTTGCTAGGTTAAAACAACCCAACCGCTGGGTTAAAACAACACATTCGCTGGGTTAAAACAACCCAACTGCTGGGTTAAAACAGCCCATTCACAGGGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307193 lncRNA upstream 179506 787249 ~ 828540 (+) True G270695
TU307173 lncRNA upstream 252660 755058 ~ 755386 (+) True G270675
TU307144 lncRNA upstream 329944 673828 ~ 678102 (+) True G270646
TU307148 lncRNA upstream 336621 671193 ~ 671425 (+) True G270650
TU307146 lncRNA upstream 364096 637481 ~ 643950 (+) True G270648
TU307334 lncRNA downstream 12883 1021693 ~ 1021905 (+) True CI01000066_01021163_01021546
TU307314 lncRNA downstream 48199 1057009 ~ 1058689 (+) True G270801
TU307345 lncRNA downstream 50705 1059515 ~ 1059734 (+) True G270827
TU307349 lncRNA downstream 65409 1074219 ~ 1074706 (+) True G270831
TU307374 lncRNA downstream 314685 1323495 ~ 1324025 (+) True G270855
CI01000066_00941480_00966469.mRNA mRNA upstream 41575 941480 ~ 966471 (+) True CI01000066_00941480_00966469
CI01000066_00925751_00935641.mRNA mRNA upstream 72194 925751 ~ 935852 (+) True CI01000066_00925751_00935641
CI01000066_00915548_00922666.mRNA mRNA upstream 84812 915548 ~ 923234 (+) True CI01000066_00915548_00922666
CI01000066_00738687_00750408.mRNA mRNA upstream 257306 738687 ~ 750740 (+) True CI01000066_00738687_00750408
CI01000066_00661106_00665703.mRNA mRNA upstream 342131 661106 ~ 665915 (+) True CI01000066_00661106_00665703
CI01000066_01015249_01016975.mRNA mRNA downstream 4959 1013769 ~ 1017334 (+) True CI01000066_01015249_01016975
CI01000066_01021163_01021546.mRNA mRNA downstream 11877 1020687 ~ 1022630 (+) False CI01000066_01021163_01021546
CI01000066_01024399_01028864.mRNA mRNA downstream 15589 1024399 ~ 1028889 (+) True CI01000066_01024399_01028864
CI01000066_01110448_01145292.mRNA mRNA downstream 101540 1110350 ~ 1145983 (+) True CI01000066_01110448_01145292
CI01000066_01165569_01184166.mRNA mRNA downstream 156759 1165569 ~ 1185012 (+) True CI01000066_01165569_01184166
TU307010 other upstream 821369 184870 ~ 186677 (+) False G270546
TU307016 other upstream 822403 184528 ~ 185643 (+) False G270546
TU307009 other upstream 822403 184870 ~ 185643 (+) False G270546
TU306975 other upstream 987773 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 835642 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 950296 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 1260359 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 1293400 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 1421900 2430710 ~ 2439169 (+) True G271105

Expression Profile