Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU307232 |
| length | 774 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 3 |
| gene id | G270720 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000066 |
| NCBI id | null |
| chromosome length | 3719324 |
| location | 1404775 ~ 1408011 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU307408 | lncRNA | upstream | 4991 | 1399573 ~ 1399784 (+) | True | G270877 |
| TU307387 | lncRNA | upstream | 49385 | 1354115 ~ 1355390 (+) | False | G270864 |
| TU307446 | lncRNA | downstream | 265547 | 1673414 ~ 1687198 (+) | True | G270902 |
| TU307444 | lncRNA | downstream | 282263 | 1690130 ~ 1691567 (+) | False | G270901 |
| TU307442 | lncRNA | downstream | 289705 | 1697572 ~ 1698632 (+) | True | G270901 |
| TU307479 | lncRNA | downstream | 317736 | 1725603 ~ 1727443 (+) | False | G270931 |
| TU307480 | lncRNA | downstream | 317736 | 1725603 ~ 1727443 (+) | True | G270931 |
| CI01000066_01358866_01360100.mRNA | mRNA | upstream | 44282 | 1358866 ~ 1360493 (+) | True | CI01000066_01358866_01360100 |
| CI01000066_01339972_01347463.mRNA | mRNA | upstream | 57312 | 1339972 ~ 1347463 (+) | True | CI01000066_01339972_01347463 |
| CI01000066_01334756_01335057.mRNA | mRNA | upstream | 69249 | 1334756 ~ 1335526 (+) | True | CI01000066_01334756_01335057 |
| CI01000066_01245954_01257380.mRNA | mRNA | upstream | 147395 | 1245954 ~ 1257380 (+) | True | CI01000066_01245954_01257380 |
| CI01000066_01236972_01244870.mRNA | mRNA | upstream | 159663 | 1236972 ~ 1245112 (+) | True | CI01000066_01236972_01244870 |
| CI01000066_01433027_01434982.mRNA | mRNA | downstream | 25160 | 1433027 ~ 1435523 (+) | True | CI01000066_01433027_01434982 |
| CI01000066_01435756_01447201.mRNA | mRNA | downstream | 27889 | 1435756 ~ 1448712 (+) | True | CI01000066_01435756_01447201 |
| CI01000066_01453501_01454593.mRNA | mRNA | downstream | 45634 | 1453501 ~ 1454967 (+) | True | CI01000066_01453501_01454593 |
| CI01000066_01468657_01476221.mRNA | mRNA | downstream | 60790 | 1468657 ~ 1476254 (+) | True | CI01000066_01468657_01476221 |
| CI01000066_01479854_01525318.mRNA | mRNA | downstream | 71987 | 1479854 ~ 1525318 (+) | True | CI01000066_01479854_01525318 |
| TU307010 | other | upstream | 1218098 | 184870 ~ 186677 (+) | False | G270546 |
| TU307016 | other | upstream | 1219132 | 184528 ~ 185643 (+) | False | G270546 |
| TU307009 | other | upstream | 1219132 | 184870 ~ 185643 (+) | False | G270546 |
| TU306975 | other | upstream | 1384502 | 19447 ~ 20273 (+) | True | CI01000066_00019553_00029834 |
| TU307522 | other | downstream | 436585 | 1844452 ~ 1847752 (+) | True | G270973 |
| TU307529 | other | downstream | 551239 | 1983956 ~ 1985014 (+) | True | CI01000066_01966833_01995697 |
| TU307673 | other | downstream | 861302 | 2269169 ~ 2279560 (+) | True | G271097 |
| TU307667 | other | downstream | 894343 | 2306852 ~ 2307020 (+) | True | G271092 |
| TU307682 | other | downstream | 1022843 | 2430710 ~ 2439169 (+) | True | G271105 |
