RNA id: CI01000069_03667639_03669979.mRNA


Basic Information

Item Value
RNA id CI01000069_03667639_03669979.mRNA
length 663
RNA type mRNA
GC content 0.46
exon number 8
gene id CI01000069_03667639_03669979
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 3667620 ~ 3669979 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAGGAAAGACCCCGGCCCAAGCCCATGGTTCCACAACTTGCCCCTCCAAAGATTCCAGAGGGTGAGCGGGTAGACTTTGATGATATTCACCGAAAAAGAATGGAGAAAGACTTTCTGGAGTTACAGACTTTAATTGATGTCCACTTTGAGCAGAGGAAGAAAGAGGAGGAAGAGCTGATCGGTCTCAAGGAGAGAATTGAAGAGCGCCAGAGGAAAGAGGATGAGGAGGCTAAGAAGAGAGCAGAAGACGAGGCCAAGAAGAAGAAGGTTTTGTCCAATATGGGGGCAAACTTTGGTGGCTTCTTAGCCAAGGCAGAGCAGAAAAGAGGGAAGCGTTTGACTGGACGAGAGATCAAGAGAAAGACTCTTTCAGAGAGACGCTCTCCTCTTGGCATCGAAAATCTCCGAGAGGATGGGTTGAGGCAGCGAGCTCAGGAAATGTGGAACTGGATTTATCAGCTGGAGTCAGAGAAGTTTGACCTCTTGGATCAAATGAAGAGACAGAAATATGAGGATTTCTCATGCTCAAAAATTAATTTTAACGCTTTACAAATCGGTTTCTTTACATCCTCGGCTTCTAATGCACCTGTGTGCTCACTGTCAGTGGGCAACACTAGCTTCAGAGCTTCCTCTGCTGAGTAACGTCTCTTCAAACAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312850 lncRNA downstream 31357 3612753 ~ 3636263 (-) True G275754
TU312924 lncRNA downstream 34506 3614318 ~ 3633114 (-) True G275828
TU312846 lncRNA downstream 39866 3595721 ~ 3627754 (-) True G275750
TU312922 lncRNA downstream 52781 3607452 ~ 3614839 (-) True G275826
TU312974 lncRNA downstream 306919 3360488 ~ 3360701 (-) True G275878
TU313017 lncRNA upstream 66675 3736654 ~ 3736958 (-) True G275920
TU313018 lncRNA upstream 67493 3737472 ~ 3737689 (-) True G275921
TU312852 lncRNA upstream 121610 3791589 ~ 3796952 (-) True G275756
TU312886 lncRNA upstream 153413 3823392 ~ 3826580 (-) True G275790
TU312869 lncRNA upstream 169255 3839234 ~ 3843586 (-) True G275773
CI01000069_03578433_03584741.mRNA mRNA downstream 82389 3578433 ~ 3585231 (-) True CI01000069_03578433_03584741
CI01000069_03571631_03573352.mRNA mRNA downstream 91877 3571535 ~ 3575743 (-) False CI01000069_03571631_03573352
CI01000069_03565665_03568486.mRNA mRNA downstream 99134 3565540 ~ 3568486 (-) True CI01000069_03565665_03568486
CI01000069_03506556_03507031.mRNA mRNA downstream 160063 3506255 ~ 3507557 (-) True CI01000069_03506556_03507031
CI01000069_03474790_03478425.mRNA mRNA downstream 189195 3474790 ~ 3478425 (-) True CI01000069_03474790_03478425
CI01000069_03670799_03677837.mRNA mRNA upstream 292 3670271 ~ 3677843 (-) True CI01000069_03670799_03677837
CI01000069_03678617_03697993.mRNA mRNA upstream 8319 3678298 ~ 3698756 (-) True CI01000069_03678617_03697993
CI01000069_03721128_03722393.mRNA mRNA upstream 50965 3720944 ~ 3722393 (-) True CI01000069_03721128_03722393
CI01000069_03739653_03764284.mRNA mRNA upstream 68471 3738450 ~ 3764284 (-) True CI01000069_03739653_03764284
CI01000069_03768812_03787588.mRNA mRNA upstream 98613 3768592 ~ 3787588 (-) False CI01000069_03768812_03787588
TU312899 other downstream 91285 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 241246 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 589452 2992504 ~ 3078168 (-) True G275699
TU312760 other downstream 667187 2989026 ~ 2991817 (-) True G275668
TU312711 other downstream 1037304 2621752 ~ 2630316 (-) True G275624
TU312875 other upstream 95694 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312842 other upstream 134637 3805663 ~ 3805758 (-) True G275746
TU313201 other upstream 1269542 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 1299316 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051580 True 1029 mRNA 0.45 14 NC_007114.7 32157337 ~ 32169754 (-)