Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU313149 |
| length | 731 |
| lncRNA type | antisense_over |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G276042 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 4527082 ~ 4527880 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU312866 | lncRNA | downstream | 311392 | 4143168 ~ 4215690 (-) | True | G275770 |
| TU312904 | lncRNA | downstream | 317433 | 4207592 ~ 4209649 (-) | True | G275808 |
| TU312853 | lncRNA | downstream | 364667 | 4162063 ~ 4162415 (-) | True | G275757 |
| TU313091 | lncRNA | downstream | 391682 | 4135088 ~ 4135400 (-) | True | G275992 |
| TU313081 | lncRNA | downstream | 438724 | 4087961 ~ 4088358 (-) | True | G275982 |
| TU313159 | lncRNA | upstream | 27329 | 4555209 ~ 4557664 (-) | True | G276052 |
| TU313177 | lncRNA | upstream | 85974 | 4613854 ~ 4617428 (-) | False | G276064 |
| TU313179 | lncRNA | upstream | 85974 | 4613854 ~ 4621254 (-) | False | G276064 |
| TU313181 | lncRNA | upstream | 89049 | 4616929 ~ 4623737 (-) | False | G276064 |
| TU313180 | lncRNA | upstream | 95222 | 4623102 ~ 4624902 (-) | True | G276064 |
| CI01000069_04444787_04454292.mRNA | mRNA | downstream | 72790 | 4444226 ~ 4454292 (-) | True | CI01000069_04444787_04454292 |
| CI01000069_04387255_04404199.mRNA | mRNA | downstream | 122739 | 4386997 ~ 4404343 (-) | True | CI01000069_04387255_04404199 |
| CI01000069_04380270_04382951.mRNA | mRNA | downstream | 144131 | 4380172 ~ 4382951 (-) | True | CI01000069_04380270_04382951 |
| CI01000069_04370591_04375147.mRNA | mRNA | downstream | 151935 | 4369896 ~ 4375147 (-) | True | CI01000069_04370591_04375147 |
| CI01000069_04350619_04363291.mRNA | mRNA | downstream | 163400 | 4350452 ~ 4363682 (-) | True | CI01000069_04350619_04363291 |
| CI01000069_04574882_04576116.mRNA | mRNA | upstream | 46486 | 4574366 ~ 4576128 (-) | True | CI01000069_04574882_04576116 |
| CI01000069_04579172_04593867.mRNA | mRNA | upstream | 50729 | 4578609 ~ 4594023 (-) | True | CI01000069_04579172_04593867 |
| CI01000069_04595809_04598174.mRNA | mRNA | upstream | 67870 | 4595750 ~ 4598174 (-) | True | CI01000069_04595809_04598174 |
| CI01000069_04599199_04600481.mRNA | mRNA | upstream | 71289 | 4599169 ~ 4600481 (-) | True | CI01000069_04599199_04600481 |
| CI01000069_04603992_04607459.mRNA | mRNA | upstream | 75219 | 4603099 ~ 4607586 (-) | True | CI01000069_04603992_04607459 |
| TU312842 | other | downstream | 720005 | 3805663 ~ 3805758 (-) | True | G275746 |
| TU312875 | other | downstream | 757862 | 3765673 ~ 3769220 (-) | True | CI01000069_03768812_03787588 |
| TU312899 | other | downstream | 950747 | 3563293 ~ 3576335 (-) | True | CI01000069_03571631_03573352 |
| TU312851 | other | downstream | 1100708 | 3426149 ~ 3426374 (-) | True | G275755 |
| TU312791 | other | downstream | 1448914 | 2992504 ~ 3078168 (-) | True | G275699 |
| TU313201 | other | upstream | 411641 | 4942073 ~ 4942199 (-) | True | G276079 |
| TU313215 | other | upstream | 441415 | 4985966 ~ 4986424 (-) | True | CI01000069_04985959_04986408 |
