RNA id: TU313225


Basic Information

Item Value
RNA id TU313225
length 3461
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G276103
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 5086117 ~ 5089577 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTATTTCAGCTTTTATTATTTTCAAATAGGACAAAAGGAAAAGGCAACTCACTTTGTGCTGCAGTTTACTGGAAAGAAAAAAAAACCCTAAAACAACAGACATCATGTGCAACTTCAAACTCTGAAACAAAACTCAGTTTTCCCTGTAAAATGGAAAACGAGTAATGATTTAGAAAACGAGGACCAAACTTAACTTACCAAGCAAAAAACTAGTTGACAGTGAACAGGAAAGCAATGTCTTTTGCTTTTAACCAAATTTCTACCAATCAACAGTGAACAGATTTACAAATCCAAAATAATTATACTTACTCAGTCTAACCTGAAAAGGGGGTCCTGGATTACGTTTTCCTTAAAAATCAAGGGGAACTGATCAGTAGCAAATGGACAGATAAAAGAAACAAAGAAAAAAAAAAAAACCTCACAGACAAGTACGTTACAAAACACAAAACCACCTGAATCATAGTTGGCTACATGCTAAATGATTCCTTGAGGTAGTTCTGTGCATTGAGACCTTTAGCACCATGCCAAACATCTCCAAAACCAAAGGAAGAGCTTATAAATATGTCAAAGAAACAAATCACACATTACTCCTCAGTGCTACTGCTCAACCGCATCATTTCTTTATTATGAAACTACACTGCATGAAAAGCAGACTATAGCTTACCCCAATGATTTAAATCAATCAGGATTTTCAACAATGCTTGTGGACAGAATCTGTGGCATCCTGAATAGAGGGTATGCACTGACGTCACTTTCCCGCTGGAACACGCTCCCTCAGCTAGACTGAGTGGCTAAAGAGCTGCTGCATGATTGGATTTAATAGGGAAACGTGAGTAAAACAAATGATTACACTAAAGGTTGGGATTGATAGTTCCTTACAACTTGTCAAAGAAACTTAATCGATGAATATCGACATGCAGCCAGGAATCGTGTTTCCTGACATTTAGATGTGCCTGATTTCGATGCCGGGGAAATACATAAAGCAAATTTGCCTGTGAACGCTTTATATAACTACAATATAGGTAGGTCTACATCCAAGTGATCACTTATATCAGTGTTATATGTATCGTTATACTGATAAAAACTATGCAAGTTTTAGGGCTGGACAGTATTTAAAAACACCCAATTATGCAGAATAAGATGGTAAATATTTAACTGATGAGTTGTCAATACAATATATAGGGTATGATTTTACCCCAAAATTCAACATTTTGACAAAATGATAATTGCAGATCCACGTTTCGCTGCCTGGAGTCCAGCTGTTTCTGTGAATTGCAGCGATCCAATTGCTTCTCTTTTCTGTAGCTTTCGGCTACAAAAAAAATCTATTTGTACAGTAAGTTGCAAAGCTCTTTCCCATTTTAGGTGTGTTTTGTGTGCTTTTCGCGGCATTCACACTGAAAACCAATGCTGCCACTCAGTCTTTTTGCCACTCGGTGGGCGTAACCACATTCATAACAGCTGACGGTGACGTCACATGCATACCCTCTACAATTTCAACTCATCCTTCTGTTTGTAAAAATGGGAAATATGTCTGTCATACGCCTGTAATGTTTATATGGAAGTTGCATTTTCTAAAGGCTTATTAGCTAGCATTAACTGCTAAGCTTTCATTAATTACTGCATATCCATTTCCCGTTTTTTTTTTTTTTTTTTTTTTCATACAAACTGTGAGACGAGTCATTGTCTGTGGTATTTGACAGAATGCCATAGATGTAGTTGAAAACAACAACATTAACATACACTACCATTCAAAAGTTTGGGGTCAGAAAGATTTTTTTTAAATGTCGGGGTGGATCTAGAAAATGATTTATAGGGTGGCAAGACCAAAGCAAACAAGCATTTAATCATCTATACTATAAACTGCAAAAGTAAAACAAATTAAAGTTATTGTGACAGATGTGAAGGGGGAGGAGAATGTATGTGCATCAGGTTTTTCGATAAGACAGACTTCCGCATAGAGTTCATGAGAGTCTGTTAATGAAGTTAACACTGCAAGCAGCCGTGCAGCAGATGTGTTTTCTTGAAAAATTTTTTGCGGTATGTCATCACATTAAAGCGCAGTTGCTGTGGTACAGAAAAAAAACGATGTACATTTATATTTTATACTGGAATAAATTTGGGGCGGTAATGCCTTTTCTAAGGGTGGCACTTGCCACCTCGTAGACCCACCATGTTTTGAAAGAAATCTCTTGTTCTCAACAAGGCTGCATTTATTTGATCAAAAATACAGTAAAAACTGTAGTACTGGGAAACAGTATTACCATTAATAATAACTGTTTTCTATGATTATTTTTTTTAATTTTAAAATACAATTTATTCCTGTGATCACAGCTGATTTTTCAGCATCATTACTCCAGTCTTCAGTGCCACATGATCCTTCAGAAATCAGTCTAATATGATTTGATGCTCAAGAAACATTATCACTGTTGAAAACAGTTGTGCCGTTTAATATTTTTTTTCAGGATTCTTTGATAAATAGTTTAAAAGAACATTTATTTGAAATCAAAATCTTTTGTAACATTATAAATGTCTTTACTGTCACTTTTAATCAATTTAATGCATCCCTGCTTTTAAAAAAAAAAAACCCTTACTGACCCAAACTTTTGAAGCATATTTGTGTACATTTAACATGTTAGGTAAAACTGAGTTAGTTAAGAAAACTCCCCTGATATTAATAAAACTGGGGGCCATCACCAAACTTGCTCTAAGTTTGGGGACATTTGCATCCAACAGCCAAATGACTGTGAGGCCCCCTGAATACAGAGAGTAAAGAGAGAAAATGTGAGACTTGCCTCAGCCTGTGCAGGGCAACACTGAGACTCTGCCTCAGCCAGTCCCATGGCATTGCTACAAGGAGAAGAAAAATCCTCAGTTTAGGACAACAACCACAGTCACAGTAGGACAGTCACACCCTTACCTGCATCTTCCTGAAAATCACAGTCAAGTAACGAGCTTTATCCTGGACATAAATGATTCTCTGGTTCATGTGTTATTTCAGTCTTTCACATGACGGTGATCTTCAGGAAGATGGCCATCTGAATGGTTGTTTATCTCTTTGAGAGCCATATGTTCTTGCATAAGGAGCTGAAAATTTAAAGGGGTCTGACACATTTAGTTCTGAGGTCCACTCAGAACTAAATTGAGTTTTTCCATGAATATTTTCCACTTTGTCTTTGATAATTACAATTTAATTGACTTTCTGTTGTAGCACCTTTTAAGCGCCCTCAACTGTGCCGCTCAAATTGTTAAGATCACACTGAAATGCTCAGGGACCTTGTTAGTTTTATATTGTTAGTTGTATGTTGTTCAAGAATAATGGTATCTATCCTAACTCCAAGCTTCCGAACACCAAAAAGGCATCACTGACGTGTAAATCTCAGATGTTGAGACATGAAATTTACATTAAGCTTACATGGTACAAAACTAATTTCTCTCAAAAGATCAAAGGAAATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313318 lncRNA downstream 26549 5059333 ~ 5059568 (-) True G276193
TU313229 lncRNA downstream 76644 5004379 ~ 5009473 (-) True G276107
TU313192 lncRNA downstream 293314 4791382 ~ 4792803 (-) False G276071
TU313193 lncRNA downstream 293414 4791382 ~ 4792703 (-) True G276071
TU313236 lncRNA downstream 375155 4704052 ~ 4710962 (-) True G276114
TU313200 lncRNA upstream 4541 5094118 ~ 5096986 (-) True G276078
TU313217 lncRNA upstream 48781 5138358 ~ 5152509 (-) True G276095
TU313328 lncRNA upstream 65459 5155036 ~ 5155302 (-) True G276200
TU313331 lncRNA upstream 69131 5158708 ~ 5158935 (-) True G276203
TU313332 lncRNA upstream 69826 5159403 ~ 5159718 (-) True G276204
CI01000069_05042346_05044105.mRNA mRNA downstream 40882 5042275 ~ 5045235 (-) True CI01000069_05042346_05044105
CI01000069_05025745_05032197.mRNA mRNA downstream 53920 5025297 ~ 5032197 (-) True CI01000069_05025745_05032197
CI01000069_04996783_05001227.mRNA mRNA downstream 84890 4996340 ~ 5001227 (-) True CI01000069_04996783_05001227
CI01000069_04985959_04986408.mRNA mRNA downstream 99709 4985693 ~ 4986408 (-) False CI01000069_04985959_04986408
CI01000069_04983344_04983640.mRNA mRNA downstream 102477 4983322 ~ 4983640 (-) True CI01000069_04983344_04983640
CI01000069_05100248_05121420.mRNA mRNA upstream 10490 5100067 ~ 5121420 (-) True CI01000069_05100248_05121420
CI01000069_05227862_05278522.mRNA mRNA upstream 138285 5227862 ~ 5278522 (-) True CI01000069_05227862_05278522
CI01000069_05321785_05324036.mRNA mRNA upstream 231694 5321271 ~ 5324097 (-) True CI01000069_05321785_05324036
TU313215 other downstream 99693 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408
TU313201 other downstream 143918 4942073 ~ 4942199 (-) True G276079
TU312842 other downstream 1279040 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 1316897 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1509782 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU16629 True 2873 lncRNA 0.39 2 NC_048565.1 15019395 ~ 15023888 (-)
tiger barb (Puntius tetrazona) TU16629 True 549 lncRNA 0.46 2 NC_056700.1 11614241 ~ 11618863 (+)