Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU313200 |
| length | 2869 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G276078 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000069 |
| NCBI id | null |
| chromosome length | 5329268 |
| location | 5094118 ~ 5096986 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU313225 | lncRNA | downstream | 4541 | 5086117 ~ 5089577 (-) | True | G276103 |
| TU313318 | lncRNA | downstream | 34550 | 5059333 ~ 5059568 (-) | True | G276193 |
| TU313229 | lncRNA | downstream | 84645 | 5004379 ~ 5009473 (-) | True | G276107 |
| TU313192 | lncRNA | downstream | 301315 | 4791382 ~ 4792803 (-) | False | G276071 |
| TU313193 | lncRNA | downstream | 301415 | 4791382 ~ 4792703 (-) | True | G276071 |
| TU313217 | lncRNA | upstream | 41372 | 5138358 ~ 5152509 (-) | True | G276095 |
| TU313328 | lncRNA | upstream | 58050 | 5155036 ~ 5155302 (-) | True | G276200 |
| TU313331 | lncRNA | upstream | 61722 | 5158708 ~ 5158935 (-) | True | G276203 |
| TU313332 | lncRNA | upstream | 62417 | 5159403 ~ 5159718 (-) | True | G276204 |
| TU313335 | lncRNA | upstream | 70046 | 5167032 ~ 5167723 (-) | True | G276207 |
| CI01000069_05042346_05044105.mRNA | mRNA | downstream | 48883 | 5042275 ~ 5045235 (-) | True | CI01000069_05042346_05044105 |
| CI01000069_05025745_05032197.mRNA | mRNA | downstream | 61921 | 5025297 ~ 5032197 (-) | True | CI01000069_05025745_05032197 |
| CI01000069_04996783_05001227.mRNA | mRNA | downstream | 92891 | 4996340 ~ 5001227 (-) | True | CI01000069_04996783_05001227 |
| CI01000069_04985959_04986408.mRNA | mRNA | downstream | 107710 | 4985693 ~ 4986408 (-) | False | CI01000069_04985959_04986408 |
| CI01000069_04983344_04983640.mRNA | mRNA | downstream | 110478 | 4983322 ~ 4983640 (-) | True | CI01000069_04983344_04983640 |
| CI01000069_05100248_05121420.mRNA | mRNA | upstream | 3081 | 5100067 ~ 5121420 (-) | True | CI01000069_05100248_05121420 |
| CI01000069_05227862_05278522.mRNA | mRNA | upstream | 130876 | 5227862 ~ 5278522 (-) | True | CI01000069_05227862_05278522 |
| CI01000069_05321785_05324036.mRNA | mRNA | upstream | 224285 | 5321271 ~ 5324097 (-) | True | CI01000069_05321785_05324036 |
| TU313215 | other | downstream | 107694 | 4985966 ~ 4986424 (-) | True | CI01000069_04985959_04986408 |
| TU313201 | other | downstream | 151919 | 4942073 ~ 4942199 (-) | True | G276079 |
| TU312842 | other | downstream | 1287041 | 3805663 ~ 3805758 (-) | True | G275746 |
| TU312875 | other | downstream | 1324898 | 3765673 ~ 3769220 (-) | True | CI01000069_03768812_03787588 |
| TU312899 | other | downstream | 1517783 | 3563293 ~ 3576335 (-) | True | CI01000069_03571631_03573352 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| bowfin (Amia calva) | TU54463 | True | 2255 | lncRNA | 0.34 | 1 | CM030125.1 | 28488842 ~ 28491096 (-) |
| mexican tetra (Astyanax mexicanus) | TU54463 | False | 371 | lncRNA | 0.35 | 1 | NC_035901.1 | 4515241 ~ 4515611 (+) |
| mexican tetra (Astyanax mexicanus) | TU9900 | False | 6200 | TUCP | 0.38 | 3 | NC_035898.1 | 2245338 ~ 2291799 (-) |
