RNA id: CI01000072_03788767_03792874.mRNA


Basic Information

Item Value
RNA id CI01000072_03788767_03792874.mRNA
length 2081
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000072_03788767_03792874
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3788170 ~ 3793728 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCTTTTTTTTTTTGTGCTGGGAAAACATTTCATTTTCAAACGTTTCATTTGCAAAACTTTAATAATTAGCTTGTAGTTTTCAGCCCATTCTCACTGATGCTCTTAAGACTGTCACAAGTCAATTCTACATTGCATCAGGCCAGCGGGCCATCATTTTTGCAATGGCATTTGGCCTTACTGACATCAGAACTGGTGCCAAATGTTTAGAGATGCCTTTCTTTTATTGAGAATGAGATTTGAGAACAGCAACTTCAGATGTCCTAAGTCTTATGGGCTCTTTGAAGCTTGGCAGGCAAAAATGTAACCGGTTTCATTTTTAGAAACACTGTTAAAATGCCCCTAATATGCTATTTTAAAGGTTCCTAATTTTGTTTTGGAGGTCTCCTACAACAGGTGTTCATGCATCAAAAGTCAAAAAACACTTTCATTTTCTCATAATACACATTACACATCACCTCATTTCTCAAGTCTAAAAATGACTCGTTCGAAGATTCAGTCTCTCTAAGCCCCACCTTTCCGAGTGCCTACTCTGCTCTGATTGGTCAGATGGCCCAATCTGTTGTGATTGGTCGACCGCTTACAGCATGTGTCAGAAACGAAACTCCCATTACCATAACTGAATTCCTAAATCCTCAGTGATTGTACACACTGTAAAGACAGTAAAGACAAAATTATTCAACCCGAACCTCCATCGCAAGGATGACTTGAGCAGGACATTTCTCAGTGATAAGTTTTTACCAATTTTTATGTTTTAAGTTTTTAGTTTGTTATACATTAAGATGTTACAATTGTAACGGTGTGCACACCAAAAGCGAATTTAATTATTTGTGTATAAAAGTCAATGCAAAGACATGAATACATGCAAATTCGGTGACAAATGCGAACGTGCAATATTCGCCTCAATCGCGTCTTCTACGGAAGTTGAAAAATCTCAACTCAAGTGGGAAATTCGCATGACGTGTTGTCGCGCAAGCCAGTCAGCAAAGAGTTTATTGACAGTTCCTCCAGAAGACAGTGAAAAGTTGTGTGCACCTCTGGGTGGCTTATCGGATCCCACAAGGACGTATGTGCATACAAATTGCCTAAGGTTTGCTAGAAAGCACCCGAAACGCACCTGCATGCAGGAAAGCAGGATCAGAGCCAAGCCACGTATATGGCGACATATGAGATGTTTTTTTCACTCTGTGAATGTTCCCTGTGTGATTCACGATGGCCTTGTGCTCATATCGATCAGACAGGAGCACCTTGTGGCTGATGCAGCGAGCATCAAAGCTGAGAACTCACCCCAGAGATGTGTCCGTATTCTTATGTGCAATCAAGGACTGCTGGATCTGAGTAGGATTATAGTTCCTGAAAAGGCTGCCTTTATGCTTGTATCAAACAGCGACATTAGGCTGAGTGTGAATGACGCTGAGTGTCAGGCAGCAGCCTGTCGACTGATTGGCCGAGAACAGGCCTGTCGGTCGGGAGCTCGACCGTGACCTTACTCTGCATTTCTCAGCCTCTCTGCACGTATTTTCCATCTCACCTCTCAGATTTATCAAATACTGTGACTTTTTCCGGCTGCCTTCCTGAAAATGGGTGTTCAACATTTTGGGGCTCTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGGATGCACCGATCCAATACCTGGATTGGAACTGGCACCCATACTGACCTTTTTAAAATGGATTGAGTATTGGCCAAGTGTGACAGATCCAATTTAATACTGTTTGTTAGTCATGGTCATTACTGTCAAGCTCCAGAAGAAAAGAGAAACAGACTTGAGCCAATGGTATTTTGCCATCAGTGACATCAACTTGGCAAGATGCAATCTGAACTCGAATTAGATTTGAGAGCTTTACTCACCCGCCAGGACCCGATATGAGATCCACCAATCAGAGAGGTTCCCGAATCTCAATTGACTTTTTGATTGGTTATAATGGAGAATATCTTGTGTTTTTTCATGAGTGCTCAGCCATTTCCAGAAATGAAAGAGCACCCACAGGAACGACACTAATGATTATTAATAATAATGATTATTATTAATAACAAATCCTATTTTCGGAAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324425 lncRNA downstream 285955 3501101 ~ 3502215 (-) True G286236
TU324438 lncRNA downstream 315119 3393763 ~ 3473051 (-) True G286249
TU324406 lncRNA downstream 351971 3410662 ~ 3436199 (-) True G286219
TU324482 lncRNA downstream 396792 3391163 ~ 3391378 (-) True G286290
TU324481 lncRNA downstream 397020 3390707 ~ 3391150 (-) True G286289
TU324445 lncRNA upstream 47942 3841670 ~ 3842062 (-) True G286256
TU324371 lncRNA upstream 176400 3970128 ~ 3976002 (-) True G286205
TU324370 lncRNA upstream 176542 3970270 ~ 3976002 (-) True G286205
TU325197 lncRNA upstream 259323 4053051 ~ 4065995 (-) False G286867
TU325196 lncRNA upstream 267031 4060759 ~ 4064416 (-) True G286867
CI01000072_03497623_03625293.mRNA mRNA downstream 162877 3497623 ~ 3625293 (-) True CI01000072_03497623_03625293
CI01000072_03455112_03462887.mRNA mRNA downstream 325283 3454671 ~ 3462887 (-) True CI01000072_03455112_03462887
CI01000072_03396929_03398233.mRNA mRNA downstream 389151 3396647 ~ 3399019 (-) True CI01000072_03396929_03398233
CI01000072_03379532_03381460.mRNA mRNA downstream 405628 3379323 ~ 3382542 (-) True CI01000072_03379532_03381460
CI01000072_03330998_03335358.mRNA mRNA downstream 452812 3330817 ~ 3335358 (-) True CI01000072_03330998_03335358
CI01000072_03844170_03870555.mRNA mRNA upstream 49764 3843492 ~ 3870555 (-) True CI01000072_03844170_03870555
CI01000072_03898250_03900844.mRNA mRNA upstream 104437 3898165 ~ 3900844 (-) True CI01000072_03898250_03900844
CI01000072_03908090_03922942.mRNA mRNA upstream 113659 3907387 ~ 3922942 (-) True CI01000072_03908090_03922942
CI01000072_03941680_03952617.mRNA mRNA upstream 147603 3941331 ~ 3952617 (-) True CI01000072_03941680_03952617
CI01000072_03959944_03964339.mRNA mRNA upstream 166191 3959919 ~ 3964616 (-) True CI01000072_03959944_03964339
TU324139 other downstream 788675 2993769 ~ 2999495 (-) True G286005
TU323875 other downstream 1617512 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 1779861 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 2160275 1602289 ~ 1602443 (-) True G285697
TU324361 other upstream 176542 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 176542 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 176542 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 176542 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 592417 4386145 ~ 4394223 (-) True G287021

Expression Profile