RNA id: CI01000072_03898250_03900844.mRNA


Basic Information

Item Value
RNA id CI01000072_03898250_03900844.mRNA
length 934
RNA type mRNA
GC content 0.49
exon number 3
gene id CI01000072_03898250_03900844
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3898165 ~ 3900844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATACTCGAGTGGTTTTAGCACTTATTCCACATCAGAATCAAAGGGAAAGTGCCATTTTTATCTCAGTCACTCAAGCGTTGTGGTGCTTCAAGTTCACAGAATAAAGATGTCGCCGTTGGTGCTGGCTGTCGGAGTGTGCTTAGCTGGGTGGATTGCTCTTTATGCTTTGCTGTGCTACACAAATGGGACTTGTGGCTATGAATGGAACTGTCGGCTAGTTACACTATTCCATGGCATCCTTGCAGTCTGTATAACTGCTTACATTGGATACATAGATGGACCGTGGCCTTTCACCAACCCAGGCAAGATGTACCAAATGATAGTATATATAACAGGGATCACCGCTATGGTGGTCAGTCTGGGCTACTTTATTTTTGACATGGCATGGTGTGTGTACTTCCGCACCGAGGGCTTGGTGATGCTCGCTCACCACACCATGAGCATCCTGGGTATTATGCTCACACTGTGGCTGGGCGAGTCGGGCATCGAGTCTTGCGCCGTGCTGTTTGGCAGCGAGATCACAAACCCCCTCCTCCAGACGCGCTGGTTCTTGAAACACTCTGGCCGCTACGACAGCTTCCTCGGAGACCTGGTGGATGTTCTGTTCGTTCTGCTGTTTGTATTCATGCGCATATTCGTCGGCGGCAACATGCTGTACTGTGAGCTGACCTCTCCGAGACCCAAGTTCATCATTAAGTGTGGCGGTGTGGCCATGTATGCGCTGTCTTGGGTGTTCATGGCTGATATCGCCCGTTTCGCATACCGCAAATCCCATGTCAAATACCAGCACTGGATGAATCGTCACAGGATGGCAGAGGTCAACGGACAGGACGTGAAGAGAGATTGAAAGATCTCTTAGATGCAGCCAGCAGATTGGCCTCTCGTTTCTAACACTGGAGAGAAGAATGAGAATCAGCGTTACAGCTAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324445 lncRNA downstream 56103 3841670 ~ 3842062 (-) True G286256
TU324425 lncRNA downstream 395950 3501101 ~ 3502215 (-) True G286236
TU324438 lncRNA downstream 425114 3393763 ~ 3473051 (-) True G286249
TU324406 lncRNA downstream 461966 3410662 ~ 3436199 (-) True G286219
TU324482 lncRNA downstream 506787 3391163 ~ 3391378 (-) True G286290
TU324371 lncRNA upstream 69284 3970128 ~ 3976002 (-) True G286205
TU324370 lncRNA upstream 69426 3970270 ~ 3976002 (-) True G286205
TU325197 lncRNA upstream 152207 4053051 ~ 4065995 (-) False G286867
TU325196 lncRNA upstream 159915 4060759 ~ 4064416 (-) True G286867
TU325206 lncRNA upstream 166092 4066936 ~ 4067174 (-) True G286873
CI01000072_03844170_03870555.mRNA mRNA downstream 27610 3843492 ~ 3870555 (-) True CI01000072_03844170_03870555
CI01000072_03788767_03792874.mRNA mRNA downstream 104437 3788170 ~ 3793728 (-) True CI01000072_03788767_03792874
CI01000072_03497623_03625293.mRNA mRNA downstream 272872 3497623 ~ 3625293 (-) True CI01000072_03497623_03625293
CI01000072_03455112_03462887.mRNA mRNA downstream 435278 3454671 ~ 3462887 (-) True CI01000072_03455112_03462887
CI01000072_03396929_03398233.mRNA mRNA downstream 499146 3396647 ~ 3399019 (-) True CI01000072_03396929_03398233
CI01000072_03908090_03922942.mRNA mRNA upstream 6543 3907387 ~ 3922942 (-) True CI01000072_03908090_03922942
CI01000072_03941680_03952617.mRNA mRNA upstream 40487 3941331 ~ 3952617 (-) True CI01000072_03941680_03952617
CI01000072_03959944_03964339.mRNA mRNA upstream 59075 3959919 ~ 3964616 (-) True CI01000072_03959944_03964339
CI01000072_03972493_03983836.mRNA mRNA upstream 71557 3972401 ~ 3983836 (-) False CI01000072_03972493_03983836
CI01000072_04125176_04131163.mRNA mRNA upstream 222714 4123558 ~ 4131448 (-) True CI01000072_04125176_04131163
TU324139 other downstream 898670 2993769 ~ 2999495 (-) True G286005
TU323875 other downstream 1727507 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 1889856 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 2270270 1602289 ~ 1602443 (-) True G285697
TU324361 other upstream 69426 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 69426 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 69426 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 69426 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 485301 4386145 ~ 4394223 (-) True G287021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016980 True 3634 mRNA 0.41 3 NC_007126.7 22435460 ~ 22444746 (+)