RNA id: CI01000072_03941680_03952617.mRNA


Basic Information

Item Value
RNA id CI01000072_03941680_03952617.mRNA
length 2059
RNA type mRNA
GC content 0.47
exon number 19
gene id CI01000072_03941680_03952617
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3941331 ~ 3952617 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTGGTCTTGGCAGATCTGCTCCTGGTTAGGGGTACCAGGTCAGGTGGATCACACAGTTCATCCTGTCAGCATGGGGTCTGGCTCATCCTCCTACACTTCCAAAACCATCTATTTGGATGTAGATGGCAAAGTGCAGAAGGTACTTTTCAGTCGTCACTGCAGCCCATGTGATATCAAAGAACTGCTGTGTTCCTCCTCCAACATCCCTAGGAACACTGCTATAATAATGGCGAACCCTGAAGGTGCTTTTGTATCCATCGATCCCACAATGCCCACCAACACCCCTAACTCCCTGTACAAAGTCATTCCTTTGTCTACCGGCCAGCTGGGAGAAAAGGAAGATATGTTTCAGAATGTGCTCTCACAGGTAGCAGAGCAGTTCAGCAGAGCGTTCAGGATCAACGAACTGAAAACGGAAGTGACCAACAGACTGGCTATGCTGGAGAAGAGAGTAGAACTGGAGGGGTTGAAGGTCGTGGAGATTGAAAAGTGCAAAAACGACCTGAAGAAACTGAGAGATGAGATGACGTCCAGAGCAGGAGGAAGAGTAAATTGTCCATGCAAATACAATTTCTCCGACGATGGAAAGAAATTAACTCCTAGACGTGATGTCCCCAGCTACCCAAAGTACACACTTTCTCAGGAGACCATTGAAGCGCTAAAGAAACCAACCTTTGATGTTTGGCACTGGGAGCACAATGAAATGCTGAGTTGCCTGGAGTACATGTACCATGACTTAGGCCTTGTGAAGGAGTTTAACATGAACCCGATTACTCTCAAGCGCTGGCTGCTGGGCATTCAGGAAAATTACCGCAGCAACCCGTTCCATAATTTCCGCCATTGTTTCTGCGTGAGTCAGATGATGTATGGCATGATCCACCTCTGCAACCTCCAGGAAAAGCTCACACTGACAGATCTGGGTATTTTAATGACTGCTGCCGTGTGTCACGACTTAGACCACCCTGGATACAACAACACGTATCAAATCAATGCTCGCACTGAGTTGGCAGTGCGCTACAATGACATCTCGCCACTAGAGAATCACCATTGCGCTGTGGCCTTCCAGATACTCTCATTGCCGGAGTGTAACATATTTGCCAACGTGGACCCAGAGGCCTTTAAACAGATCCGACAGGCTATCATCACACTGATTTTGGCCACGGATATGGCCAGGCATGGCGAGATTCTGGACTCGTTCAAGCACAAAGTGGACAATTTTGACTTCACCAATGAGGAGCATGTGACTTGCCTGAAGATGGTCCTTATCAAATGTTGTGACATTTCCAATGAAGTCCGGCCTACAGAGGTGGCAGAGCCGTGGGTGGACTGTTTGCTGGAGGAATACTTCATGCAGAGTGATAGAGAGAAATCCGAGGGGCTTCCTGTGGCACCCTTCATGGACCGAGACAAAGTCACCAAGCCCACAGCCCAGATTGGCTTCATTAAATTTGTCCTCATCCCCATGTTTGAATCTGTCATGAAGCTGTTCCCACAGATTGAAGAGATTATGGTGCAGCCTCTCAGAGACTCGCGGGACCACTATGAGGAGCTGAAGCAAATTGATGATGCCATGACCGAGGAGGCCCGTCTGCACTGTGTGAACCGAGTTCCGGAGGTCACATGTGTTCGCTATTATGACAAGGTTAGGCTTGTACGCATCATTTCATTCATATGCTTCACTGTCAGTGTTTGGCGTCTTCGTCTATAGATCAGCACATTTTGATGGATGGAGATCACGGCATATTTCCTTCGCTAAGGGCTGCTTAACTTGTTGAAACAGGACTGGGGTGCGAAGTTTGTGATTGCAAGCTATCAATTAAAGAAGATTTTGAGAGGTGAATGAAAAGTGGTATATAAATAGGCTTGGTTTTGTGTCACATGACCCTAAACGTAGGGCTAAAGCACATGTACAAATTATATAGTGCAGTTCGTCTGTCATTGTTGCTGGTGCACTGACTGGAACATGTACGTCTGAACCTGTTTTTAAAGTCACGCTTTTTCCATCCCGACTGGAGACGCTGGATATGTTTGTGCCTTTGGCTTGTTTTCATAATAAA

Function

GO: NA

KEGG:

id description
K13761 PDE9; high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324445 lncRNA downstream 99269 3841670 ~ 3842062 (-) True G286256
TU324425 lncRNA downstream 439116 3501101 ~ 3502215 (-) True G286236
TU324438 lncRNA downstream 468280 3393763 ~ 3473051 (-) True G286249
TU324406 lncRNA downstream 505132 3410662 ~ 3436199 (-) True G286219
TU324482 lncRNA downstream 549953 3391163 ~ 3391378 (-) True G286290
TU324371 lncRNA upstream 17511 3970128 ~ 3976002 (-) True G286205
TU324370 lncRNA upstream 17653 3970270 ~ 3976002 (-) True G286205
TU325197 lncRNA upstream 100434 4053051 ~ 4065995 (-) False G286867
TU325196 lncRNA upstream 108142 4060759 ~ 4064416 (-) True G286867
TU325206 lncRNA upstream 114319 4066936 ~ 4067174 (-) True G286873
CI01000072_03908090_03922942.mRNA mRNA downstream 18389 3907387 ~ 3922942 (-) True CI01000072_03908090_03922942
CI01000072_03898250_03900844.mRNA mRNA downstream 40487 3898165 ~ 3900844 (-) True CI01000072_03898250_03900844
CI01000072_03844170_03870555.mRNA mRNA downstream 70776 3843492 ~ 3870555 (-) True CI01000072_03844170_03870555
CI01000072_03788767_03792874.mRNA mRNA downstream 147603 3788170 ~ 3793728 (-) True CI01000072_03788767_03792874
CI01000072_03497623_03625293.mRNA mRNA downstream 316038 3497623 ~ 3625293 (-) True CI01000072_03497623_03625293
CI01000072_03959944_03964339.mRNA mRNA upstream 7302 3959919 ~ 3964616 (-) True CI01000072_03959944_03964339
CI01000072_03972493_03983836.mRNA mRNA upstream 19784 3972401 ~ 3983836 (-) False CI01000072_03972493_03983836
CI01000072_04125176_04131163.mRNA mRNA upstream 170941 4123558 ~ 4131448 (-) True CI01000072_04125176_04131163
CI01000072_04150260_04155131.mRNA mRNA upstream 197613 4150230 ~ 4157566 (-) True CI01000072_04150260_04155131
CI01000072_04156907_04167270.mRNA mRNA upstream 204290 4156907 ~ 4167270 (-) True CI01000072_04156907_04167270
TU324139 other downstream 941836 2993769 ~ 2999495 (-) True G286005
TU323875 other downstream 1770673 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 1933022 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 2313436 1602289 ~ 1602443 (-) True G285697
TU324361 other upstream 17653 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 17653 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 17653 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 17653 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 433528 4386145 ~ 4394223 (-) True G287021

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016976 True 1761 mRNA 0.48 19 NC_007126.7 22333778 ~ 22348626 (+)