RNA id: CI01000072_03959944_03964339.mRNA


Basic Information

Item Value
RNA id CI01000072_03959944_03964339.mRNA
length 1406
RNA type mRNA
GC content 0.48
exon number 5
gene id CI01000072_03959944_03964339
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3959919 ~ 3964616 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTTCTAACCTTTACAAGACAGAAAGAGCATCCCAGTTTGAAATCCCCTGGTCTAAGAGCCCCGATTTCATTCGTAACTCAATTTTGTCAAAATGTGTCATTGCGTCTTGCTTTTGAACACCACTGCGGATGTATTATATCATGTCACACAAATATGCTCTAATACATGACTGCTCATATCTGCCATGTAACAGATATAACAACAAAAACACGTCTCCAACCATCTCGCACTCATCCTAGTGCCTTTACTGAGGAGACAAGCGCACACATGCACAAATGCACACACACAAAGGGGCCCTGAAAATAATCACTGTGGAGAAGCTTGTAAAGCAAGCAAAGCACACACACACATACGAGATCGCACATAGAGTTGTTGTTCAGGCTGGGGTCCTGAGAGTGGGGTTCAGAGCAGCCAGTGTCCCGTCTGGCAGGAAGCACTCTGCATTCGCAGCGACGTGCCTTGAGTGGACAAATCATGCTGATTGTGTGGGAGAGAAACCCAGCGCTGCTCCCAAGATGAAGGCAGAGAGGGAGGCATCATGCAAAAAGACAGCCGTTCCTTCACTGTTTATTCTCCTATGGCTTTTCATCTTTTCCTTGGCAGAAACATTGTCTAAAAAATATGAATGTAATAGTGGGGTGAACATCAGCAGCCCGTCTCCTCTAGTGCGAGGTACACTCGGAGGCTCCGCCCTTCTCTCCGTGACCTACACCAGCACCAGCTCCGACCAGCCCGTTATTAAGTGGCAACTGAAAAGAGACAAACCCATCACTGTGGTCCAGTCCATTGGTACGGAAATCATTGGGAACCTTAGGCCCGAGTACCGAGGTCGAATCCTCCTGTATGAGAACGGCTCCCTGCTCCTGCATCACCTGCAGCTGTCTGATGAGGGCTCATATGAGGTGGAGATCTCCATCACTGATGATACCTTCACTGGGGAGCGATATGTCAACCTAACTGTGGATGTTCCAGTGTCCAGGCCTTTTGTTCACATGGTGGCCTCATCCGTCCTGGAGCTGACTGAGTTCTTCATACTCAACTGCACTCACAATAGTGGCACCAAACCCACTTATAGCTGGCTGAAGGGTGGGAAAACTTTGACCAATGACTCGCGTCTGCTCCTGTCACATGACCAGAAGGTCCTGACCATCTCCCGTGTTGTGATGTCAGATGATGACGTCTACAGCTGCAGGGTGGAAAACCCCATCAGCAGTATGAAGAGCCTGCCTGTCAAACTCACTGTCTACAGACGGAGTTCTCTATATATCATCCTCTCCACGGGAGGCATTTTCTTACTCATCACCTTGGTGACTGTTTGCGCCTGTTGGAAACCCTCCAAAAAGTACCAGCTCTATTATCCCTATATTCATTATCTTTGATTAGTCTAAAGCAAGCCACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324445 lncRNA downstream 117857 3841670 ~ 3842062 (-) True G286256
TU324425 lncRNA downstream 457704 3501101 ~ 3502215 (-) True G286236
TU324438 lncRNA downstream 486868 3393763 ~ 3473051 (-) True G286249
TU324406 lncRNA downstream 523720 3410662 ~ 3436199 (-) True G286219
TU324482 lncRNA downstream 568541 3391163 ~ 3391378 (-) True G286290
TU324371 lncRNA upstream 5512 3970128 ~ 3976002 (-) True G286205
TU324370 lncRNA upstream 5654 3970270 ~ 3976002 (-) True G286205
TU325197 lncRNA upstream 88435 4053051 ~ 4065995 (-) False G286867
TU325196 lncRNA upstream 96143 4060759 ~ 4064416 (-) True G286867
TU325206 lncRNA upstream 102320 4066936 ~ 4067174 (-) True G286873
CI01000072_03941680_03952617.mRNA mRNA downstream 7302 3941331 ~ 3952617 (-) True CI01000072_03941680_03952617
CI01000072_03908090_03922942.mRNA mRNA downstream 36977 3907387 ~ 3922942 (-) True CI01000072_03908090_03922942
CI01000072_03898250_03900844.mRNA mRNA downstream 59075 3898165 ~ 3900844 (-) True CI01000072_03898250_03900844
CI01000072_03844170_03870555.mRNA mRNA downstream 89364 3843492 ~ 3870555 (-) True CI01000072_03844170_03870555
CI01000072_03788767_03792874.mRNA mRNA downstream 166191 3788170 ~ 3793728 (-) True CI01000072_03788767_03792874
CI01000072_03972493_03983836.mRNA mRNA upstream 7785 3972401 ~ 3983836 (-) False CI01000072_03972493_03983836
CI01000072_04125176_04131163.mRNA mRNA upstream 158942 4123558 ~ 4131448 (-) True CI01000072_04125176_04131163
CI01000072_04150260_04155131.mRNA mRNA upstream 185614 4150230 ~ 4157566 (-) True CI01000072_04150260_04155131
CI01000072_04156907_04167270.mRNA mRNA upstream 192291 4156907 ~ 4167270 (-) True CI01000072_04156907_04167270
CI01000072_04191370_04195085.mRNA mRNA upstream 226754 4191370 ~ 4195085 (-) True CI01000072_04191370_04195085
TU324139 other downstream 960424 2993769 ~ 2999495 (-) True G286005
TU323875 other downstream 1789261 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 1951610 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 2332024 1602289 ~ 1602443 (-) True G285697
TU324361 other upstream 5654 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 5654 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 5654 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 5654 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 421529 4386145 ~ 4394223 (-) True G287021

Expression Profile