RNA id: CI01000072_04150260_04155131.mRNA


Basic Information

Item Value
RNA id CI01000072_04150260_04155131.mRNA
length 3251
RNA type mRNA
GC content 0.39
exon number 7
gene id CI01000072_04150260_04155131
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4150230 ~ 4157566 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTCAACAGCCCAGGTCCCTTGAGAACGCGAAGTGAACACATTTAAGACAAAACAATCCATCACATTCACAAATCCCTCCATTTATCTCTGTGAGAGAGATCAGCTTTTTGCCGTTTCTAGTCATTCACCACCTTACAGATAGAGAATGGTGCTCCCGGTGACCAGGAGATGGAATTAAGCAGCCACTTCATGCACAAAAGGAAATGAGAATGGCGTAACAGTTTGATGGATAGTCAATGAAAAGTGTTCAGTGAATTCAAGCTGCTCTCTTGTTTCTAGATAAGGATGGTTAGCCATATTGGTCTTGCCTTGTGTTGTACGTGGGCCGTCACCAACATGAGATTTGAAACCATAGATCTGCTTGGATCAGCGCCCACCACATTATAACGCATTTTTATCTTTTGCCCCCACGGCTCTTTGCGCATTACAGCGAGAGGGTTATCTGAGGATTTTAGTCTGTTGAGCTTTATTCTTGTTAAGTAGCTCATTTCTTTATTTAATAATTTTGTTGTTGTTTATCTTTTTCAGATTTAAGATTCAGTCAAGGGAGAATTTCACAGCAGTTTTTGCCCTTCCTCTTGAACATCTGCTGGTGATGTATTATGAAACATATAATCATCCTCTTAATAATTATAATATTCTAAATCATAATATCACATTCTAATACTTTATTGTTTGATTTATCAGACATTTTGGAACAGGATTGTACATTGCTGCCATTATAACTAGAAGACACATAATTACTAAAGAAACTTTTTCTTATTGATCAAAGACCCTTAATACATCTTAGCATTGAAATGTCTTCTGTCTGACTATATTATGCTATCCAAAACTCTCTTTCTGAAGGTTGACTCCACATGCTAAGAAGTCTATTTAGTTTTGATTTAAGCCGTACCAAGATATTATTTTACCAAACTGCAGTCTTCTGGCAGCAAAAGAACCCAAATCTTCAGAAAAAGCAAATATGCTGCTGCACTTCAGTGTAACAAAGATTACAATCCATGTAGACATCCACTTACTGATATGATTAGAATTAGTAATTGTCATATGAATACTAGTATGATGAGAGCTGTTTCTTGTGTCTTATTATAAAGTTAGAAGGTGTACTTATCCTGTTACACAGAAAAACTTTCTTCTTTCTTACCTGTATTAATAATTACAATTCATAATCATTAAATTTGTGTCCTACTAATGACATAATTAGCTTTTAGATAATTAATTTACAATACCGTTCAAAAGATTGGAGTCTGTAAGATTTTTAAAAATATTTTTGAAAGTCTCCTGCTCACCAAGGCTGCATTTATTTGATAAAAAATACAGTAAAACAGTAAAATTGGGAAATATTATTTATCACATTTTAAAATAACAATTTTCTGTTTTAATGTATTTTAAAATGTAATTTATTCCTGTGATGGCAAAGCTGAATTTTCAGCAGCCATTACTCCAGTCTTCAATGTCACATGATCCTTAAAGGATTAGTTCACTTTCAAATGAAAATTAGCCCAAGCTTTACTCACCCTCAAGCCATCCTAAGTGTATATGACTTTCTTCTTTCTGATGAACATAATCGGAGATATTTTAATAAATATTCTAAAGCATCTGAGCTTTATAATGGCAGTAAGCGATACCAACAAGTATGAGCTGAAGAAAGTGCTTCCATCCATCATAAACGTACTCCACACGGCTCCAGGGGGTTAATAATAAGGCCTTCTGAAGTGAAGCAATGCGTTTGTGTAAAACAAAATCCATATTTAAAAAGTTACGAAGTAAAATATCTAGTTACCGCCAGACCGCATTCTGTATTCAACTTACGAAAAAAGTGTAAAACTCTCGCAGTTCAAAAAGCTTACGGTACACCCTACGCCTTCCCTATTCAACTTACGGAAAAAGCTTAACTGATGTGACGCCAGTTCCGTTTTTTTCGTACGTTGAATACGGAATGCGGTCTGGCCGAAGCTAGATATTTTACTTCATAACTTGTTAAATATGGATTTTTTTTTTTTTACACAAACGCATCGCTTCGCTTCAGAAGGCCTTTATTAACCCCCGGAGCCACGTGGAGCACACATTTATGATGGATGGATGTGGATGGAAACACTTTCTTCAGCTCATACTCGTTGGTCCCGCTCACTGCCATTATAAAGCTCGGATGTGTCAGGATATTTATTAATATTTCTCCAATTGTGTTCATCAGAAAGAAGAAAGTCATATACACCTAGGATGGCTTGAGGGTGAGTAAAGCTGGGGCTAATTTTCATGTGAAAGTGAACTAATCCTTTAAGAAATCATTTTAATATGCTGATTTCCCTCAAGAATCATTTCTTTACTGTCAGTGTTGATTTATTTAATGCATCTTTCCTGAATACAAATATTATTATTTTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCCAAAAAATTAGTCTAATATCATGACAGCTGACCACAAGATCCTGGCTTCTGTGATTTCTGTGATTGGGAGCATGGCTCTGGATGATGTCATCAATAAAAAGCTGGCAGGACGTGAAGAATTTTGGAAATGCGCTCTTCAAGCAATGGAGTGGTGCGTCGCCTGTGAATGTAGAAGTGTCCTCTATCCCCTCCTGGGTTTGATGATCAACTTAGCCTCAAATCCCTCTCAAGTTGTCCAGGAGCACGCTGTTCTGGCCAGCAGCAGGTGCATGGACCTGCTGAGCGATTCCTCTGGAGGCGTCATCACAAGAGCTGCAGGTTTGCTGAGTGTTCTCCTCCCTATGTCTTCTGATGCCACTCAGGAAGTTGTGCGGAATGGAATAGTGAAGAAGTTGCTGAAGATTCTGAAGGTAGGAGGAGAGATGAGCTCCAGATACTCCATTAAAGCCTTGACAGTCTGTACTGCCTCAATCCCACGGGCTTGTGAGGAGCTGGTTAAGCTTGACAAACGGCTGCACACTTTGAGAAAACTCCTGGGCGGCATTGACGAGTTGGTGGTGGGGAACGCAGCTTTGTGTATGGGCCATTGCTTAGAAGTGGATGGAGCTGCCAGTGGCCTCCTGGGCACAGACTGCGTGCCGTTGCTGCTACGCCACAGCGCCGGAGACGCCAAAAGAGCAGCCGTTCGGCAGAACGCAGCCATCACTCTTGGGAAGCTATGCAAAATAGAACCCAGGCACATGGAGAAACTCAGGGAGCTTCATGGTTTAGAAATCCTTCATTCCTGTGTGAGATTGATCACGTGAGCCACTATCCACATTCGGTTCCTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325213 lncRNA downstream 56905 4093110 ~ 4093325 (-) True G286880
TU325210 lncRNA downstream 69017 4080982 ~ 4081213 (-) True G286877
TU325207 lncRNA downstream 82435 4067593 ~ 4067795 (-) True G286874
TU325206 lncRNA downstream 83056 4066936 ~ 4067174 (-) True G286873
TU325196 lncRNA downstream 85814 4060759 ~ 4064416 (-) True G286867
TU325218 lncRNA upstream 111456 4269022 ~ 4270014 (-) True G286883
TU325274 lncRNA upstream 118994 4276560 ~ 4276869 (-) True G286936
TU325275 lncRNA upstream 119437 4277003 ~ 4277262 (-) True G286937
TU325278 lncRNA upstream 147733 4305299 ~ 4305518 (-) True G286940
TU325283 lncRNA upstream 152112 4309678 ~ 4309912 (-) True G286945
CI01000072_04125176_04131163.mRNA mRNA downstream 18782 4123558 ~ 4131448 (-) True CI01000072_04125176_04131163
CI01000072_03972493_03983836.mRNA mRNA downstream 166394 3972401 ~ 3983836 (-) False CI01000072_03972493_03983836
CI01000072_03959944_03964339.mRNA mRNA downstream 185614 3959919 ~ 3964616 (-) True CI01000072_03959944_03964339
CI01000072_03941680_03952617.mRNA mRNA downstream 197613 3941331 ~ 3952617 (-) True CI01000072_03941680_03952617
CI01000072_03908090_03922942.mRNA mRNA downstream 227288 3907387 ~ 3922942 (-) True CI01000072_03908090_03922942
CI01000072_04191370_04195085.mRNA mRNA upstream 33804 4191370 ~ 4195085 (-) True CI01000072_04191370_04195085
CI01000072_04197826_04201434.mRNA mRNA upstream 40260 4197826 ~ 4201434 (-) True CI01000072_04197826_04201434
CI01000072_04207000_04210775.mRNA mRNA upstream 49395 4206961 ~ 4211078 (-) True CI01000072_04207000_04210775
CI01000072_04284927_04303593.mRNA mRNA upstream 126860 4284426 ~ 4303593 (-) True CI01000072_04284927_04303593
CI01000072_04315603_04316880.mRNA mRNA upstream 157345 4314911 ~ 4316880 (-) True CI01000072_04315603_04316880
TU324366 other downstream 174163 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 174228 3970270 ~ 3976002 (-) False G286205
TU324367 other downstream 174228 3970270 ~ 3976002 (-) False G286205
TU324368 other downstream 174228 3970270 ~ 3976002 (-) False G286205
TU324139 other downstream 1150735 2993769 ~ 2999495 (-) True G286005
TU325381 other upstream 228579 4386145 ~ 4394223 (-) True G287021
TU325650 other upstream 1223154 5380720 ~ 5382001 (-) True G287264

Expression Profile